| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 2116011 | 294 (1.060) | 28 (0.100) +CA |
13/168 | NT | 9.7% | intergenic (+174/+293) | SAS1966/unknown | threonine dehydratase biosynthetic/– |
| ? | BX571857 | 2116271 = | 239 (0.860) | intergenic (+434/+33) | SAS1966/unknown | threonine dehydratase biosynthetic/– | |||||
CTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2115974‑2116011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAC > BX571857/2116271‑2116367 || CTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATC > 1:4232404/1‑65 TTTTATTTGAACGTTTTAGACATAAAAAAAGAGACCTCGCGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGG < 2:186453/97‑1 TATTTTGACGTTTTAGACATAAAAAAAGAGACCTCACGG > 2:1365653/1‑39 TTGATGTTTTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAA < 2:657620/97‑1 TTTTAGACATAAAAAAAGAGACCTCGCGGTCTCAATGCGGCTCATCGCATCC < 2:1215514/52‑1 TTTTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCC > 1:1215514/1‑52 TTTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGACCGTAAGTTCGAC > 2:3678547/1‑97 TTAGACATAAAAAAAGAGACCTCGCGGTCTCAATGCGGCTCATCGCATCCATTTTTTG < 1:3920217/58‑1 TTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGCCAACGTTCTACTCTAGCGGAACGTAAGTTCGACc > 1:4437414/1‑96 TTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTG > 2:3920217/1‑58 TTAGACATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTT‑TCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTA > 2:2985932/1‑97 aaAAAAAAAGAGACCCCCCGGTCTCAATGCGGCTCATCGCATCCCTTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATC < 2:2206625/95‑1 ATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATC > 2:1443461/1‑97 ATAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCCACTACCATC > 1:62161/1‑97 TAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGA > 2:3652231/1‑97 TAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATC > 1:3116737/1‑42 TAAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATC < 2:3116737/42‑1 AAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGA < 2:898475/97‑1 AAAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTCCCACCGAC > 2:1009792/1‑97 AAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACG > 2:3473575/1‑97 AAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCC > 2:4355443/1‑41 AAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATC > 1:1370223/1‑40 AAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATC < 2:1370515/40‑1 AAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATC > 1:1370515/1‑40 AAAAAAGAGACCTCACGGTCTCAATGCGGCTCATCGC > 2:3180913/1‑37 AAAAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCACCGACGCT > 2:4526210/1‑97 AAGAGACCTCTCGGTCTCAATGCGGCTCATCGCGTCCCTTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTA < 2:1683715/97‑1 AAGAGACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTT > 1:698467/1‑44 agctACCTCGCGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAA < 2:4085058/93‑1 GAGACCTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCACCGACCCTAGGG > 2:355241/1‑97 gcCCTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAG < 2:322264/95‑1 ACCTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGACCGTAAGTTCGACTACCATCGACGCTAAGGcg > 2:4602995/1‑95 CTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGG < 1:91757/62‑1 CTCACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGG > 2:91757/1‑62 CTCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTT > 1:1453125/1‑97 TCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGATTACCATGGCCGCTAAGGCGCTTA > 1:2831744/1‑97 TCACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTA > 1:1766232/1‑97 CACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGCCGCCAAGGAGCTTca > 2:3789513/1‑95 ACGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAA > 2:963201/1‑97 ACGGTCTCAATGCGGCTCATCGCATCCA‑TTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAC < 1:3652231/97‑1 || CTTTTATTTTGACGTTTTAGACATAAAAAAAGAGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2115974‑2116011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGTCTCAATGCGGCTCATCGCATCCATTTTTTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAC > BX571857/2116271‑2116367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |