| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | BX571857 | 2,705,150 | 30 bp→TCGGTGGTCGCCGTATCATTAAAAAAAAAA | 9.3% | coding (836‑865/1437 nt) | SAS2519 ← | arginine/ornithine antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | = 2705149 | 322 (1.160) | 22 (0.120) +TCGGTGGTCGCCGTATCATTAAAAAAAAAA |
14/112 | NT | 9.3% | coding (866/1437 nt) | SAS2519 | arginine/ornithine antiporter |
| ? | BX571857 | 2705180 = | 344 (1.240) | coding (835/1437 nt) | SAS2519 | arginine/ornithine antiporter | |||||
GTAATTCACCAGCAAGCAATGTCCATCCTAACCATGCACCTAGTACCGAAATAATTAAACCAATATTTACAAGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2705069‑2705149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAATCACGCCTTGAGCT > BX571857/2705180‑2705238 |||||||||||||||||||||||||||||| GTAATTCACCAGCAAGCAATGTCCATCCTAACCATGCACCTAGTACCGAAATAATTAAACCAATATTTACAAGTGTAGATCCCGGTGGTCGCCGTAT > 2:4205574/1‑97 CACCAGCAAGCAATGTCCATCCTAACCATGCACCTAGTACCGAAATAATTAAACCAATATTTACAAGTGTAGATCTCGGTGGTCGCCGTATCATTAA > 2:1738725/1‑97 ACCATGCACCTAGTACCGAAATAATTAAACCAATATTTACAAGTGTAGATCTCGGTGGACGCCGAATCATTAAAAAAAAAAGTAACATACTTGGCGA > 2:2370511/1‑97 ACCATGCACCTAGTACCGAAATAATTAAACCAATATTTACAAGTGTAGATCCCGGTGGACGCCGAATCATTACAAAAACAAGTGCCATACTTGGCGA > 2:3548779/1‑97 TACCGAAATAATTAAACCAATATTTACAAGTGTAGATCCCCGAGCTCGCCGAATAGTTACAAACAAAAGTGCCATACTTGGCGAATCTAATTGAGAA > 2:4086138/1‑97 ACCGAAATAATTAAACCAATATTTACAAGTGTAGATCTCGGTGGACGCAGAATCATTACAAAAAAATCTGCCATACTTGGCGAATCTAATTGAGAAA > 2:1973757/1‑97 AAATAATTAAACCAATATTTACAAGTGTAGATCTCGGAGGTCGTAGAATAATTAAAAAAACCAGTGCCATACTTGGCGAATCTAATTGAGAAATATG > 2:2092693/1‑97 ATAATTAAACCAATATTTACAAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGTGCCATACTTGGCGAATCTAATTGAGAAATATGAa > 2:2681366/1‑96 AATTAAACCAATATTTACAAGTGTAGATCCCGGAGGACGCACAATCATTAAAAAAAACAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTT > 2:2876160/1‑97 ATTAAACCAATATTTACAAGTGTAGATCTCGGTGGACCCCGAATCGTTACAAACACCAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTT > 2:973949/1‑97 ATTAAACCAATATTTACAAGTGTAGATCTCGGACGACGCCGAATCATTAAAAAAAACTGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTT > 2:1627400/1‑97 TTAAACCAATATTTACAAGTGTAGATCTCGGTGGTCGCCGAATCATTAAAAAAAAAAGAGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTG > 2:2158124/1‑97 TTAAACCAATATTTACAAGTGTAGATCTCGGAGGACGCCGAATCATTACAAAAAAAAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTG > 2:2158171/1‑97 TAAACCAATATTTACAAGTGTAGATCTCGGTGGACGCCGTATCATTAAAAAAAAAAAAGACATACTTGGCGAATCTAATTGAGAAATATGATTTTGC > 2:2364485/1‑97 TAAACCAATATTTACAAGTGTAGATCTCGGAGGTCGCCGAATCATTAAAAAAACATGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGC > 2:1667564/1‑97 AAACCAATATTTACAAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCA > 2:2330774/1‑97 CAATATTTACAAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGTGCCATACTTGGCGAATCCAATTGAGAAATATGATTTTGCAAAAT > 2:1936688/1‑97 CAATATTTACAAGTGTAGATCTCGGTGGTCGCCGAATCGTTAAAAAAACCAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAAT > 2:2083567/1‑97 CAATATTTACAAGTGTAGATCTCGGTCGTCGCACAATCATTACAAACAAAAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAAT > 2:3313610/1‑97 CAATATTTACAAGTGTAGATCTCGGTCGACGCACAATAGTTACAAAAAACAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAAT > 2:3975871/1‑97 AATATTTACAAGTGTAGATCTCGGAGGACCCCGAATCATTACAAAAACCTGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAATC > 2:854091/1‑97 AATATTTACAAGTGTAGATCTCGGAGGACCCCGAATCATTAAAAAAAAAAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAATC > 2:2161814/1‑97 TATTTACAAGTGTAGATCTCGGTGGTCGCCGAATCATTAAAAAAAAAAGTGCCATACTTGGCGAATCAAATTGAGAAATATGATTATGCAAAATCAC > 2:39004/1‑97 TGTAGATCTCGGTGGTCGCCGAATCATTAAAAAAAAAAGTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAATCACGACTTGAGCT > 2:1715255/1‑97 |||||||||||||||||||||||||||||| GTAATTCACCAGCAAGCAATGTCCATCCTAACCATGCACCTAGTACCGAAATAATTAAACCAATATTTACAAGTGTAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BX571857/2705069‑2705149‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGCCATACTTGGCGAATCTAATTGAGAAATATGATTTTGCAAAATCACGCCTTGAGCT > BX571857/2705180‑2705238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |