Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 918,920 3 bp→TCA intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583918,9200AT100.0% 163.4 / NA 70intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (32/38);  total (32/38)
*CP042583918,9210GC100.0% 160.8 / NA 70intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (32/38);  total (32/38)
*CP042583918,9220TA100.0% 164.3 / NA 70intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (32/38);  total (32/38)

ATTAGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATAGTATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAAAGTCTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTAAGTTTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATAGTGGGGTTAGTGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTAGTGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTGTCTGGTATATCTT  >  CP042583/918641‑919187
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                         
aTTAGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     <  1:216240/288‑1 (MQ=255)
aTTAGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     <  1:420846/288‑1 (MQ=255)
aTTAGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     <  2:1683459/288‑1 (MQ=255)
aTTAGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     <  1:1141152/288‑1 (MQ=255)
   aGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTAtt                                                                                                                                                                                                                                                                  >  1:452311/1‑288 (MQ=255)
      tGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTAc                                                                                                                                                                                                                                                                <  2:1271622/287‑1 (MQ=255)
      tGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACACCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTAc                                                                                                                                                                                                                                                                <  2:1198186/287‑1 (MQ=255)
         aCTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACAtata                                                                                                                                                                                                                                                           <  2:1476775/289‑1 (MQ=255)
           tGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGTTATTACAtatact                                                                                                                                                                                                                                                         >  2:790384/1‑289 (MQ=255)
           tGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTa                                                                                                                                                                                                                                                                    <  2:4430/278‑1 (MQ=255)
           tGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTa                                                                                                                                                                                                                                                                    >  1:4430/1‑278 (MQ=255)
             cAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACAtatactat                                                                                                                                                                                                                                                       >  2:776848/1‑289 (MQ=255)
             cAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACAtatactat                                                                                                                                                                                                                                                       >  1:1635402/1‑289 (MQ=255)
             cAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACAtatactat                                                                                                                                                                                                                                                       >  2:831482/1‑289 (MQ=255)
                     tattTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATg                                                                                                                                                                                                                                               >  1:360260/1‑289 (MQ=255)
                       tttGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTAc                                                                                                                                                                                                                                                                >  2:1000641/1‑270 (MQ=255)
                       tttGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTAc                                                                                                                                                                                                                                                                <  1:1000641/270‑1 (MQ=255)
                            aaCAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCgaga                                                                                                                                                                                                                                        >  1:809013/1‑289 (MQ=255)
                                   cTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAgatattga                                                                                                                                                                                                                                  <  1:1059320/288‑1 (MQ=255)
                                        aCGATATAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGatattgatattg                                                                                                                                                                                                                             <  1:831482/288‑1 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTTGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACata                                                                                                                                                                                                                                                             >  2:162126/1‑253 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTTGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACata                                                                                                                                                                                                                                                             <  1:162126/253‑1 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     >  2:587599/1‑245 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     <  1:587599/245‑1 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTAtt                                                                                                                                                                                                                                                                  <  1:680142/248‑1 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTAtt                                                                                                                                                                                                                                                                  >  2:680142/1‑248 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACata                                                                                                                                                                                                                                                             >  1:1366039/1‑253 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACata                                                                                                                                                                                                                                                             <  2:1366039/253‑1 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCgaga                                                                                                                                                                                                                                        >  1:674419/1‑274 (MQ=255)
                                           atatAAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCgaga                                                                                                                                                                                                                                        <  2:674419/274‑1 (MQ=255)
                                            tataAAAAATGAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTaga                                                                                                                                                                                                                        <  1:1107462/289‑1 (MQ=255)
                                                aaaaaTGAGTACGATAAAAATCAAACAAATTCAATCTCGCTTTTTGAAAACACGCTTGTTTGTTTTATGCGGTTAGACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTATGGAATGTGAAGCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAGTTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAgtgt                                                                                                                                                                                                                    <  2:1635402/289‑1 (MQ=255)
                                                      gAGTACGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTg                                                                                                                                                                                                               >  1:1355341/1‑288 (MQ=255)
                                                          aCGAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCggg                                                                                                                                                                                                          <  2:1355341/289‑1 (MQ=255)
                                                            gAAAAAAATCAAACATATTCAATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCa                                                                                                                                                                                                        <  1:1204713/289‑1 (MQ=255)
                                                                                        tttttGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGTTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTa                                                                                                                                                                             <  1:790384/288‑1 (MQ=255)
                                                                                            tGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGt                                                                                                                                                                        <  1:377599/289‑1 (MQ=255)
                                                                                                aaaacacTGGTGTGTTTTATTCGGTTATACAATGAAATAAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGttatt                                                                                                                                                                    <  2:1327995/286‑1 (MQ=255)
                                                                                                  aaaacTGGTTTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTtattat                                                                                                                                                                  <  2:360260/286‑1 (MQ=255)
                                                                                                      cTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACata                                                                                                                                                                                                                                                             >  2:1473384/1‑194 (MQ=255)
                                                                                                      cTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACata                                                                                                                                                                                                                                                             <  1:1473384/194‑1 (MQ=255)
                                                                                                             gtTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCa                                                                                                                                                                                                        >  1:4129/1‑240 (MQ=255)
                                                                                                             gtTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCa                                                                                                                                                                                                        <  2:4129/240‑1 (MQ=255)
                                                                                                                 tATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     <  2:1766155/175‑1 (MQ=255)
                                                                                                                 tATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGt                                                                                                                                                                                                                                                                     >  1:1766155/1‑175 (MQ=255)
                                                                                                                   tGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTaga                                                                                                                                                                                                                        <  2:556887/218‑1 (MQ=255)
                                                                                                                   tGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTaga                                                                                                                                                                                                                        >  1:556887/1‑218 (MQ=255)
                                                                                                                                     tCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCg                                                                                                                                                                                                                                           <  2:1263998/181‑1 (MQ=255)
                                                                                                                                     tCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCg                                                                                                                                                                                                                                           >  1:1263998/1‑181 (MQ=255)
                                                                                                                                          cGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGc                                                                                                                            <  1:570573/287‑1 (MQ=255)
                                                                                                                                                   aaTGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTAt                                                                                                                                                    >  1:169877/1‑254 (MQ=255)
                                                                                                                                                   aaTGAAGAGGATACTCCATGTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTAt                                                                                                                                                    <  2:169877/254‑1 (MQ=255)
                                                                                                                                                                      gTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGa                                                                                                                                        >  1:223252/1‑247 (MQ=255)
                                                                                                                                                                      gTCTGGAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGa                                                                                                                                        <  2:223252/247‑1 (MQ=255)
                                                                                                                                                                           gAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCgaga                                                                                                                                                                                                                                        >  2:1268288/1‑146 (MQ=255)
                                                                                                                                                                           gAATGTGAATCACTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCgaga                                                                                                                                                                                                                                        <  1:1268288/146‑1 (MQ=255)
                                                                                                                                                                                               aGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAat                                                                                                                                                                                                                                                  >  1:1076560/1‑116 (MQ=255)
                                                                                                                                                                                               aGAATTTGAGGAAATGCAGAATGATAATGATCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAat                                                                                                                                                                                                                                                  <  2:1076560/116‑1 (MQ=255)
                                                                                                                                                                                                                   atgataatgatCTATCATTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACg                                                   <  1:776848/287‑1 (MQ=255)
                                                                                                                                                                                                                                 tcattattcatGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTTATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGCTATTATTGGGATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTATGAGTATTGTTTTGATGATGAAAATAGAAGTGTCCAGACAGAGCGGATAAATACGCCGGGAATATCGGagt                                   >  2:1102108/4‑287 (MQ=255)
                                                                                                                                                                                                                                           tGAGAATATTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTg                          >  1:292857/1‑288 (MQ=255)
                                                                                                                                                                                                                                                 tatTGCGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGa                   >  2:1642673/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      cGTACTAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTg               >  1:1425019/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           tAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACttt                                                                                                                                                      >  2:64997/1‑148 (MQ=255)
                                                                                                                                                                                                                                                           tAATGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACttt                                                                                                                                                      <  1:64997/148‑1 (MQ=255)
                                                                                                                                                                                                                                                            aaTGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGCTTTGTCTGGta        >  1:1847317/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             aTGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTGTCTGGtat       <  2:809013/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             aTGATACACAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGCTATTATTGGTATAACTTTATGGAGTATATTGAAAGCATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGGGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTGTCTGGtat       <  1:1102108/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  acacAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTGTCTGGTATATCtt  >  1:747311/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  acacAAATTTATTCAGGGGTTTCAGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTTCAGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTGTCTGGTATATCtt  >  1:497671/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                         
ATTAGTTGCACTGCAAATAATTATTTGAAACAGGCCTGGAACGATATAAAAAATGAGTACGAAAAAAATCAAACATATAGTATCACGCTTTTTGAAAACACACTGGTGTGTTTTATGCGGTTATACAATGAACTCAGACGTAAAGTAAATGAAGAGGATACTCCATGTCTGGAATGTGAAAGTCTAGAAAAAGAATTTGAGGAAATGCAGAATGATAATGATCTAAGTTTATTTATGAGAATATTGCGTACTAATGATACACAAATTTATAGTGGGGTTAGTGGAGGTATTACATATACTATACAATATGTTCGAGATATTGATATTGTTAGAGTGTCCTTGCCGGGCAGAGCTAGTGAGTCTATCACAGATTTTAAAGGTTATTATTGGTATAACTTTATGGAGTATATTGAAAACATTAATGCGTGTGATGATGTTTTTTCTGAGTATTGTTTTGATGATGAAAATATAAGTGTCCAGCCAGAGCGGATAAATACGCCGGGAATATCTGATTTGGATTCTGACATTGATTTGTCTGGTATATCTT  >  CP042583/918641‑919187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: