New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2429960	42 (0.650)	10 (0.210)	9/200	4.7	21.6%	intergenic (+47/+66)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
	?	NC_002947	= 2429975	41 (0.840)					intergenic (+62/+51)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
Rejected: Coverage evenness skew score above cutoff.

ACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGA  >  NC_002947/2429812‑2430109                                                                                                                                                     |                                                                                                                                                      aCTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAc                                                                                                                                                      <  2:935562/150‑1 (MQ=255) aCTTTCCCCGAAAAAGAAGGCGCCGTGCTGTTAGGCCAGAACCTGGCTGTAGATGGCAGTGGCTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAc                                                                                                                                                      <  1:419485/150‑1 (MQ=39)   tttCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGa                                                                                                                                                    <  2:603867/150‑1 (MQ=255)           aaaaaGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTAGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTTCCGGCCTCTTCGCGGTAGAAACAGCCCCTACCCCGACCGCTcca                                                                                                                                            >  2:664577/1‑148 (MQ=255)                           gCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCgg                                                                                                                            <  2:1130602/150‑1 (MQ=255)                                   gCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCAccc                                                                                                                    >  1:858671/1‑150 (MQ=255)                                      aGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCcgcg                                                                                                                 <  2:1012475/150‑1 (MQ=255)                                              gCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                                                         <  2:858671/150‑1 (MQ=255)                                                                                                            ttGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                          >  1:880800/1‑87 (MQ=255)                                                                                                            ttGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                          <  2:880800/87‑1 (MQ=255)                                                                                                                cTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCa                                                                                                                       >  1:1370149/1‑70 (MQ=255)                                                                                                                cTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCa                                                                                                                       <  2:1370149/70‑1 (MQ=255)                                                                                                                      cGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCa                                                                                                                                             >  1:373263/1‑42 (MQ=255)                                                                                                                      cGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCa                                                                                                                                             <  2:373263/42‑1 (MQ=255)                                                                                                                       ggCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACAt                                                                                <  1:495880/102‑1 (MQ=255)                                                                                                                       ggCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACAt                                                                                >  2:495880/1‑102 (MQ=255)                                                                                                                          ctctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACAt                                                                                >  2:558557/1‑99 (MQ=255)                                                                                                                          ctctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACAt                                                                                <  1:558557/99‑1 (MQ=255)                                                                                                                           tctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCGAGGACGGGCTCAACAGCAATCACATTACATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGc                            >  1:1576023/1‑150 (MQ=39)                                                                                                                           tctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAgg                                                                                                 <  2:1230557/81‑1 (MQ=255)                                                                                                                           tctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAgg                                                                                                 >  1:1230557/1‑81 (MQ=255)                                                                                                                                  gggTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGcc                     >  2:527402/1‑150 (MQ=255)                                                                                                                                  gggTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACAGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGcc                     >  2:211317/1‑150 (MQ=255)                                                                                                                                   ggTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGccc                    >  2:960998/1‑150 (MQ=255)                                                                                                                                        aCCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAAAACCGGTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGa               >  1:920789/1‑150 (MQ=255)                                                                                                                                         cccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGAt              >  1:869973/1‑150 (MQ=255)                                                                                                                                          ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACAt                                                                                >  1:1577006/1‑83 (MQ=255)                                                                                                                                          ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACAt                                                                                <  2:1577006/83‑1 (MQ=255)                                                                                                                                          ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGcc                                                         <  1:390588/106‑1 (MQ=255)                                                                                                                                          ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGcc                                                         >  2:390588/1‑106 (MQ=255)                                                                                                                                            gCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCa                              <  2:180658/131‑1 (MQ=255)                                                                                                                                            gCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCa                              >  1:180658/1‑131 (MQ=255)                                                                                                                                            cccccTACAACGACCGCTCAAACCCTTGTTGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCAc           <  1:664577/147‑1 (MQ=255)                                                                                                                                                cTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                          <  2:129132/99‑1 (MQ=255)                                                                                                                                                cTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                          >  1:129132/1‑99 (MQ=255)                                                                                                                                                cTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGc                      >  1:665536/1‑135 (MQ=255)                                                                                                                                                cTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGc                      <  2:665536/135‑1 (MQ=255)                                                                                                                                                cTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGaa       >  1:313095/1‑150 (MQ=255)                                                                                                                                                    aaCGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTc                               <  2:1502262/122‑1 (MQ=255)                                                                                                                                                    aaCGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTc                               >  1:1502262/1‑122 (MQ=255)                                                                                                                                                    aaCGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACg   >  1:259601/1‑150 (MQ=255)                                                                                                                                                     aCGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGa  <  1:211317/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      ACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGA  >  NC_002947/2429812‑2430109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.