Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947195,6340CT34.9% 125.2 / 111.1 128T380T (ACC→ACT) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (45/37);  new base T (19/25);  total (65/63)
Fisher's exact test for biased strand distribution p-value = 2.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 139 total aligned reads displayed.

TTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCA  >  NC_002947/195490‑195782
                                                                                                                                                |                                                                                                                                                     
tttCCAGACCCCCTCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACcgc                                                                                                                                                  <  2:1218788/150‑1 (MQ=255)
            ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGCCGGc                                                                                                                                      >  2:464807/1‑150 (MQ=255)
              cgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGTTAATTTCGAGCAACTGACCCCCAATCCGACCCCGACTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGa                                                                                                                                    <  2:790870/148‑1 (MQ=11)
                aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc                                                                                                                                  <  2:481858/150‑1 (MQ=39)
                  tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGccc                                                                                                                                >  1:1256619/1‑150 (MQ=12)
                     cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc                                                                                                                             <  1:616188/150‑1 (MQ=39)
                       tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc                                                                                                                                  >  2:1251040/1‑143 (MQ=12)
                       tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGc                                                                                                                                  <  1:1251040/143‑1 (MQ=12)
                         tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGTCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTc                                                                                                                         <  1:1548630/150‑1 (MQ=16)
                          acaacaACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGCAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa                                                                                                                        >  1:435311/1‑150 (MQ=255)
                           caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc                                                                                                                       >  2:889843/1‑150 (MQ=38)
                           caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc                                                                                                                       >  2:1490243/1‑150 (MQ=17)
                            aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGATCAcc                                                                                                                      >  1:1110094/1‑150 (MQ=38)
                                    ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAc                                                                                                                                               <  1:296299/117‑1 (MQ=12)
                                    ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGAc                                                                                                                                               >  2:296299/1‑117 (MQ=16)
                                      cGACCCTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGgcggcg                                                                                                           <  1:172807/150‑1 (MQ=38)
                                       gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc                                                                                                                                              >  2:326870/1‑115 (MQ=255)
                                       gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc                                                                                                                                              <  1:326870/115‑1 (MQ=255)
                                         ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACCGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCGCCACCGCGACCCTGACGACGACCCCGCCGGCCACCGA‑AAGCCGCGTgg                                                                                                        >  2:1084277/1‑149 (MQ=11)
                                         ccGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGa                                                                                                        <  1:294572/150‑1 (MQ=19)
                                           gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATc                                                                                                      >  2:1529390/1‑150 (MQ=17)
                                            tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCa                                                                                                     >  2:1032226/1‑150 (MQ=40)
                                            tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCa                                                                                                     <  1:889843/150‑1 (MQ=40)
                                              aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACt                                                                                                   <  2:897087/150‑1 (MQ=12)
                                               gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACtt                                                                                                  >  1:1192605/1‑150 (MQ=40)
                                               gCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGACACTGACCCCGAATCCGAACCAGGCGCAGACCACGATCAACGACTCGGTCGACACGACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCAcgt                                                                                                  >  1:1456808/1‑148 (MQ=14)
                                                      cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCt                                                                                                                                            >  1:971921/1‑102 (MQ=255)
                                                      cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCt                                                                                                                                            <  2:971921/102‑1 (MQ=255)
                                                      cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGt                                                                                           <  1:706496/150‑1 (MQ=39)
                                                      cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCTGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGGCCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGAt                                                                                                       <  1:1548327/138‑1 (MQ=255)
                                                      cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTacaagat                                                                                           >  1:1004721/1‑146 (MQ=12)
                                                        tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACCCCACGACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGa                                                                                         <  2:796843/150‑1 (MQ=255)
                                                        tCGAGAAAGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGCCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGa                                                                                         <  1:343960/150‑1 (MQ=11)
                                                          gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa‑a                                                                                                                  <  2:1023320/123‑1 (MQ=40)
                                                          gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa‑a                                                                                                                  >  1:1023320/1‑123 (MQ=40)
                                                          gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa                                                                                                                        <  2:388629/118‑1 (MQ=12)
                                                           agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGAccc                                                                                      >  1:1381045/1‑150 (MQ=12)
                                                            gaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCt                                                                                     <  2:1534461/150‑1 (MQ=255)
                                                            gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCAGACCACACCTCAGACCATGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCt                                                                                     <  1:365960/150‑1 (MQ=11)
                                                               cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAg                                                                                  >  1:764664/1‑150 (MQ=255)
                                                                gCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGc                                                                                 >  2:1447133/1‑150 (MQ=255)
                                                                gCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACAACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGc                                                                                 >  1:457432/1‑150 (MQ=255)
                                                                gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGc                                                                                 >  1:1000369/1‑150 (MQ=12)
                                                                    caggcggTAACTTCGAGCACCTGACCCCGAATCCGACCCCGGCTCCTACCACGATCAACGCCTCGGTCGACACCACTCCCGCGACCCTGCCGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc                                                                             <  1:352093/148‑1 (MQ=11)
                                                                           tcttttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCAACGCTGACGACCA‑CATCCAGTTCAATGATAGGCATCATGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa                                                                      <  1:30701/147‑1 (MQ=2)
                                                                               ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGaga                                                                  >  2:30701/1‑148 (MQ=2)
                                                                                  gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc                                                                        >  1:383116/1‑141 (MQ=12)
                                                                                  gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc                                                                        <  2:383116/141‑1 (MQ=12)
                                                                                  gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg                                                               >  1:419239/1‑150 (MQ=255)
                                                                                   aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGAc                                                                                                                                         <  1:228823/76‑1 (MQ=25)
                                                                                   aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg                                                              <  2:419239/150‑1 (MQ=255)
                                                                                      aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGtga                                                           <  2:944200/150‑3 (MQ=9)
                                                                                       aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg                                                                          >  1:641375/1‑134 (MQ=21)
                                                                                       aCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg                                                                          <  2:641375/134‑1 (MQ=18)
                                                                                        cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc                                                         <  1:1194893/150‑1 (MQ=9)
                                                                                           aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg                                                      >  2:1078689/1‑150 (MQ=255)
                                                                                            ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa                                                     <  1:1353150/150‑1 (MQ=12)
                                                                                            ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa                                                     >  1:150956/1‑150 (MQ=255)
                                                                                             cccGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa                                                    <  1:1139829/150‑1 (MQ=255)
                                                                                             cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGac                                                    >  1:946853/1‑149 (MQ=255)
                                                                                             cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa                                                    >  2:1338670/1‑150 (MQ=255)
                                                                                             cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACCTACACCGTGACCCTGa                                                                                   >  1:1483851/1‑119 (MQ=21)
                                                                                             cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACCTACACCGTGACCCTGa                                                                                   <  2:1483851/119‑1 (MQ=14)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc                                                                        >  1:1515183/1‑129 (MQ=17)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc                                                                        <  2:1515183/129‑1 (MQ=17)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg                                                              >  1:2247/1‑139 (MQ=9)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg                                                              <  2:2247/139‑1 (MQ=16)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc                                                   <  2:361241/150‑3 (MQ=255)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc                                                   <  2:202754/150‑1 (MQ=255)
                                                                                              ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGCCTGGCACCGA‑AGGCGGCGTGATCACTTACACCGTGAACCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc                                                   >  1:918060/1‑150 (MQ=255)
                                                                                                gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa                                                                               >  2:1571625/1‑120 (MQ=17)
                                                                                                gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCt                                                 >  2:337477/1‑150 (MQ=255)
                                                                                                gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCt                                                 <  1:907917/150‑1 (MQ=255)
                                                                                                     cGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTCAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCa                                            >  1:1168365/1‑150 (MQ=255)
                                                                                                      gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa                                           <  2:764664/150‑1 (MQ=255)
                                                                                                         cccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTaca                                                                                               <  2:765638/95‑1 (MQ=34)
                                                                                                         cccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTaca                                                                                               >  1:765638/1‑95 (MQ=34)
                                                                                                         cccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg                                        >  1:26294/1‑150 (MQ=255)
                                                                                                          ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc                                       >  1:1553462/1‑150 (MQ=255)
                                                                                                                 ataCCACGATCAACGCCTCGGTCGACACCCCTCACGCGACCCTGACGGCGCGCCCGTCGGCCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa                                <  2:1553462/148‑1 (MQ=14)
                                                                                                                      ccGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc                           <  1:1084277/149‑1 (MQ=255)
                                                                                                                           cAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGa                      >  1:1596283/1‑150 (MQ=255)
                                                                                                                             aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAg                    >  1:388682/1‑150 (MQ=255)
                                                                                                                              cGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACGCGACCCATAAGCGATCAACCGTTAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc                   <  2:1273539/150‑1 (MQ=14)
                                                                                                                                aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg                 <  1:1078689/150‑1 (MQ=255)
                                                                                                                                 cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg                <  2:1381045/150‑1 (MQ=255)
                                                                                                                                  tCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc                                       <  2:574267/126‑1 (MQ=255)
                                                                                                                                  tCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc                                       >  1:574267/1‑126 (MQ=255)
                                                                                                                                     tgcGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaa            >  1:1448972/3‑150 (MQ=39)
                                                                                                                                        gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc         >  1:486780/1‑150 (MQ=255)
                                                                                                                                          caccactacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTCCCCAGACGCCGGTCACCCTGACCCTCTCCACCGGCCAACCGATTCCCGTTGAAGCGGGTaaatctca       <  2:873756/150‑6 (MQ=11)
                                                                                                                                          caccaccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa       <  2:26294/150‑1 (MQ=255)
                                                                                                                                            ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg     >  2:1253031/1‑150 (MQ=255)
                                                                                                                                             cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGTCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgcg    <  2:435311/150‑3 (MQ=255)
                                                                                                                                             caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACAcc                                                                                             <  2:1312168/61‑1 (MQ=37)
                                                                                                                                             caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGCCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg    >  2:191488/1‑150 (MQ=255)
                                                                                                                                             caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCAA‑AGGCGGCGTGATCACTTACAcc                                                                                             >  1:1312168/1‑61 (MQ=25)
                                                                                                                                               ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGTCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCa  >  1:423083/1‑150 (MQ=255)
                                                                                                                                                caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGaa                     >  2:1054897/1‑130 (MQ=16)
                                                                                                                                                caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGaa                     <  1:1054897/130‑1 (MQ=25)
                                                                                                                                                |                                                                                                                                                     
TTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGA‑AGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCA  >  NC_002947/195490‑195782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑