New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156328 =	42 (0.970)	12 (0.340)	10/216	2.7	33.3%	intergenic (+25/‑191)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156401 =	14 (0.400)					intergenic (+98/‑118)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase

CCAGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1156500‑1156328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGT  >  NC_002947/1156401‑1156541                                                                                                                                                                                                                                                                                                                            CCAGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGT                                                                                                                                                                      <  2:328142/150‑1   AGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAG                                                                                                                                                                    >  2:258846/1‑150           GCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGT                                                                                                                                                            <  2:137561/150‑1                                           TCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGT                                                                                                                                                                      <  2:826462/108‑1                                           TCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGT                                                                                                                                                                      >  1:826462/1‑108                                             ACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGG                                                                                                                                                             <  1:1009054/115‑1                                             ACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGG                                                                                                                                                             >  2:1009054/1‑115                                                                     GGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGC                                                                                                                                                    <  2:905499/100‑1                                                                     GGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGC                                                                                                                                                    >  1:905499/1‑100                                                                                                GGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACC                                                                       >  1:280160/1‑150                                                                                                          GCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTA                                                             <  2:280160/150‑1                                                                                                                   CCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCA                                                    >  1:604445/1‑150                                                                                                                    CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAA                                                          >  2:888160/1‑143                                                                                                                    CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAA                                                          <  1:888160/143‑1                                                                                                                        TCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGA                                               >  1:937735/1‑150                                                                                                                           TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTG                                            <  2:937735/150‑1                                                                                                                           TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTA                                                             <  2:621477/133‑1                                                                                                                           TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTA                                                             >  1:621477/1‑133                                                                                                                           TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTG                                            >  2:853574/1‑150                                                                                                                                            TCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGC                           <  2:604445/150‑1                                                                                                                                               GTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCA                        <  1:853574/150‑1                                                                                                                                                      TAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCNAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCC                 >  1:723585/1‑150                                                                                                                                                             GGGTGCGCCGGCTAAGAGGCCTGCACAGGCTCCCAAAATGTCACGGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGTATCAAGCTGGCCCATGACCCCCCTCAAC          <  2:431741/150‑1                                                                                                                                                               GTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCT        <  1:137561/150‑1                                                                                                                                                                   ACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCG                                                                                        <  2:232756/66‑1                                                                                                                                                                   ACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCG                                                                                        >  1:232756/1‑66                                                                                                                                                                     CCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGT  >  2:859656/1‑150                                                                                                                                                                                                                                                                                                                            CCAGTCGTTTGCGAATTCTAGCCAGCGGGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1156500‑1156328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagaGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGT  >  NC_002947/1156401‑1156541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.