| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5344519 = | 50 (1.150) | 12 (0.350) +TAGGAGCGGGTTTACCCGCGAAGAGGCCG |
11/208 | 2.3 | 27.5% | intergenic (+46/‑132) | pgi‑II/acsA‑II | glucose 6‑phosphate isomerase/acetyl‑CoA synthetase |
| ? | NC_002947 | = 5506607 | 31 (0.710) | intergenic (+18/‑181) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease | |||||
AACCCGCTCCTACGAGGTAACGCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5344545‑5344519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA < NC_002947/5506607‑5506503 ||||||||||||||||||||||||||||| AACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCA > 1:209842/1‑133AACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCA < 2:209842/133‑1 CCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACACAAGGCTCAAGCGCTG > 1:598971/1‑81 CCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACACAAGGCTCAAGCGCTG < 2:598971/81‑1 CCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTAT > 1:166471/1‑115 CCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTAT < 2:166471/115‑1 TCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCA > 1:631355/1‑114 TCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCA < 2:631355/114‑1 CTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAA > 1:868989/1‑105 CTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAA < 2:868989/105‑1 TACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGA > 2:661414/1‑150 ACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCGCACCACCAAACTATCCACCCACAAAATCACAACCATCAACACCGCCACCAGCGGGAA > 1:666467/1‑150 ||||||||||||||||||||||||||||| AACCCGCTCCTACGAGGTAACGCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5344545‑5344519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA < NC_002947/5506607‑5506503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |