New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808219 =	1 (0.020)	21 (0.660)	9/196	2.6	67.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988991	20 (0.620)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAAC  >  NC_002947/4808077‑4808366                                                                                                                                               |                                                                                                                                                    gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGaa                                                                                                                                              <  1:721085‑M1/8‑1 (MQ=255) gttggggtcgggccagttatgcctgggggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgagggcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGaa                                                                                                                                              >  1:387133‑M1/143‑150 (MQ=255)   ggCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGCGTTTGGCGGGAGGTTCTCAGCACCTGGGGGGTGTTCGCCGGGGGGTTTTCCGCTCCTGGGAGGGGTGTGGCGGGGGAGGTTAAGCGCCTGGGAGATGGAACGCCGACcgcgcggc                                                                                                                                            >  2:950456/1‑146 (MQ=255)      tttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgcc                                                                                                                                         >  2:721085‑M1/138‑150 (MQ=255)      tttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgcc                                                                                                                                         <  2:1027422‑M1/13‑1 (MQ=255)               agttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcg                                                                                                                                >  2:254289‑M1/129‑150 (MQ=255)               agttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggaacgggtttaCCCGCGAAGCGCCGCgcgggcg                                                                                                                                <  2:596735‑M1/22‑1 (MQ=255)                gttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcgg                                                                                                                               <  2:30799‑M1/23‑1 (MQ=255)                        tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAt                                                                                                                       <  2:616631‑M1/31‑1 (MQ=255)                        tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAt                                                                                                                       <  2:616623‑M1/31‑1 (MQ=255)                         gtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacataaaggtcggaggcgtgcgccttatgcaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAtc                                                                                                                      <  1:945085‑M1/32‑1 (MQ=255)                            ggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTca                                                                                                                   <  2:258961‑M1/35‑1 (MQ=255)                                              cctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCCCGCGcggcgcttcgcgg                                                                                                                     >  1:264217‑M1/98‑124 (MQ=255)                                              cctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCCCGCGcggcgcttcgcgg                                                                                                                     <  2:264217‑M1/33‑7 (MQ=255)                                                           ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTc                                                                                    >  1:555289‑M1/85‑150 (MQ=255)                                                            tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                                   <  2:413000‑M1/67‑1 (MQ=255)                                                            aagatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagctggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                                   <  1:577989‑M1/67‑1 (MQ=255)                                                              gatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggngcagganggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaa                                                                                 <  1:630052‑M1/69‑1 (MQ=255)                                                                  tcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTc                                                                             <  2:639398‑M1/73‑1 (MQ=255)                                                                      gtcgaaaaaaaagggcggcggcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAAc                                                                         >  2:1063666‑M1/74‑150 (MQ=255)                                                                         tacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaatgtaggagcgggtttaCCCGCGAAGCGCCGCCCGCGCGGCGCt                                                                                                                           >  2:772106‑M1/71‑97 (MQ=255)                                                                         tacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaatgtaggagcgggtttaCCCGCGAAGCGCCGCCCGCGCGGCGCt                                                                                                                           <  1:772106‑M1/27‑1 (MQ=255)                                                                             aaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTcc                                                                  <  2:820189‑M1/84‑1 (MQ=255)                                                                                                       gcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTc                                        <  1:328273‑M1/110‑1 (MQ=255)                                                                                                          tgatggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaaa                                     <  1:45439‑M1/113‑1 (MQ=255)                                                                                                                actggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCa                               <  1:910222‑M1/119‑1 (MQ=255)                                                                                                                 ctggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaaa                                                                                >  2:1041974‑M1/31‑100 (MQ=255)                                                                                                                 ctggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCaaaa                                                                                <  1:1041974‑M1/70‑1 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCaa                                                                          >  2:720773‑M1/28‑103 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCaa                                                                          <  1:720773‑M1/76‑1 (MQ=255)                                                                                                                    gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGAGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgc                           <  2:369447‑M1/123‑1 (MQ=255)                                                                                                                      cgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAAc                                                                         <  1:979664‑M1/77‑1 (MQ=255)                                                                                                                      cgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAAc                                                                         >  2:979664‑M1/26‑102 (MQ=255)                                                                                                                            aaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc                   >  1:413000‑M1/20‑150 (MQ=255)                                                                                                                             aacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTcccc                  >  2:630052‑M1/19‑150 (MQ=255)                                                                                                                                       cgggtaaaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATcc        <  2:998516‑M1/142‑1 (MQ=255)                                                                                                                                             taCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCACCATTCGGACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaacaac  >  2:577989‑M1/3‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                    AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAAC  >  NC_002947/4808077‑4808366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.