New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4075786	NA (NA)	87 (0.920)	56/248	0.8	100%	intergenic (‑328/+113)	PP_3586/tpx	transposase/2‑Cys peroxiredoxin
	?	NC_002947	= 4957611	0 (0.000)					intergenic (‑49/+114)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein

CCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGG  >  NC_002947/4075650‑4075934                                                                                                                                         |                                                                                                                                                      cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt                                                                                                                                          <  2:2443567/150‑1 (MQ=32) cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt                                                                                                                                          <  2:1437246/150‑1 (MQ=32) cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGAt                                                                                                                                          <  1:1586770/150‑1 (MQ=32)  ccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATg                                                                                                                                         <  2:137066/150‑1 (MQ=32)      aCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcac                                                                                                                                     >  2:2053052/1‑150 (MQ=35)       cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcaca                                                                                                                                    >  2:9802/1‑150 (MQ=37)        aaaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAg                                                                                                                                   <  2:253077/150‑1 (MQ=38)                aGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑aa                                                                                                                          >  1:1512755/1‑150 (MQ=255)                  gcggcTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑aaaa                                                                                                                        <  1:1280974/150‑1 (MQ=255)                       tGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCtt                                                                                                                               >  2:385431/1‑139 (MQ=255)                       tGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCtt                                                                                                                               <  1:385431/139‑1 (MQ=255)                        ggCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGc                                                                                                                  <  2:1436007/150‑1 (MQ=255)                            cTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTTCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGcc                                                                                                              >  2:400084/1‑149 (MQ=255)                              aCCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACg                                                                                                            >  1:1147013/1‑150 (MQ=255)                                cGGGCCAACCGCCTTTTCTTTTTCAACATGTCAGCGTTGCTGGGGAACTGAAGCCGTACCCCTCATGTTTGCTGCGCGATAGCGCATCCTGGAAGGGTTGGTTTATCTCCTACGGGGATGATACCCCCTTTG‑AAAACTGTGCCGCACGtg                                                                                                          >  2:2148332/1‑149 (MQ=14)                                cGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCGCGtt                                                                                                          <  2:1355072/150‑1 (MQ=255)                                 gggCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTg                                                                                                         >  1:1987359/1‑150 (MQ=255)                                  ggCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACtgt                                                                                                                    >  1:978169/1‑138 (MQ=255)                                  ggCCAAACGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACtgt                                                                                                                    <  2:978169/138‑1 (MQ=255)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGa                                                                                                    >  2:349268/1‑150 (MQ=255)                                       aCCGCCTTTTCTTTTTTTTTTTTTTTGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACTTGGATTTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAg                                                                                                   >  2:178457/1‑150 (MQ=18)                                       aCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAg                                                                                                   >  2:574602/1‑150 (MQ=255)                                          gCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                <  2:2418998/150‑1 (MQ=255)                                          gCCTTTTCTTTTTCAAAATGTCAGCGACGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                <  2:1859289/150‑1 (MQ=255)                                           ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                               >  2:363501/1‑150 (MQ=255)                                           ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                               <  2:793821/150‑1 (MQ=255)                                           ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                               <  1:2053052/150‑1 (MQ=255)                                           ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                               <  1:574602/150‑1 (MQ=255)                                             ttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGtt                                                                                             <  1:363501/150‑1 (MQ=255)                                                  tttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTAccc                                                                                        >  1:2148055/1‑150 (MQ=255)                                                  tttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTAccc                                                                                        >  2:2105277/1‑150 (MQ=255)                                                   ttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCcg                                                                                       <  1:1351659/150‑1 (MQ=255)                                                    tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCcgc                                                                                      <  1:2105277/150‑1 (MQ=255)                                                        aaaaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAag                                                                                  >  1:401882/1‑150 (MQ=255)                                                         aaaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                 <  1:1459666/150‑1 (MQ=255)                                                          aaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAagag                                                                                <  2:1512755/150‑1 (MQ=255)                                                          aaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAagag                                                                                <  1:9802/150‑1 (MQ=255)                                                            tGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGc                                                                              <  1:178457/150‑1 (MQ=255)                                                              tCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                            <  1:859053/150‑1 (MQ=255)                                                              tCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                            <  2:1147013/150‑1 (MQ=255)                                                                aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGc                                                                          >  2:1610811/1‑150 (MQ=255)                                                                    tCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAg                                                                      <  1:349268/150‑1 (MQ=255)                                                                         gCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTAc                                                                 <  1:586664/150‑1 (MQ=255)                                                                          cGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCtt                                                                                                                               >  2:2538058/1‑88 (MQ=255)                                                                          cGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCtt                                                                                                                               <  1:2538058/88‑1 (MQ=255)                                                                             aaCTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAc                                                             <  2:585369/150‑1 (MQ=255)                                                                               cTGAAGCCGTACACCTCATGTTTGCCGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgc                                                           <  1:1661419/150‑1 (MQ=255)                                                                                tGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACTGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgcc                                                          >  2:299814/1‑150 (MQ=255)                                                                                  aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                <  2:2240020/110‑1 (MQ=255)                                                                                  aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                >  1:2240020/1‑110 (MQ=255)                                                                                    gcaatACACCTCACGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGCcccccgcc                                                      >  2:2064915/5‑150 (MQ=255)                                                                                       gTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTg                                                   >  2:1959020/1‑150 (MQ=255)                                                                                        tACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGTATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGc                                                  <  2:2309339/150‑1 (MQ=255)                                                                                        tACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGc                                                  <  2:651626/150‑1 (MQ=255)                                                                                        tACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGc                                                  <  1:1388835/150‑1 (MQ=255)                                                                                           acCTCCTGGTTGCTGGGCGACAGCGCAGCCGGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGTAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGcccc                                               <  1:2194608/150‑1 (MQ=38)                                                                                            ccTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCa                                              >  1:1971408/1‑150 (MQ=255)                                                                                             cTCATGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTAAGGGGAGGTCAGA‑CGTGTGTTATTCTGTCCCGCACGTTGTAGGAGCGGGTTTCCCCGGGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCAc                                             <  1:578256/150‑1 (MQ=21)                                                                                             cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAg                                                                      >  2:2193036/1‑125 (MQ=255)                                                                                             cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAg                                                                      <  1:2193036/125‑1 (MQ=255)                                                                                                  gTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                <  1:1320991/94‑1 (MQ=255)                                                                                                  gTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                >  2:1320991/1‑94 (MQ=255)                                                                                                       ctgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTa                                   <  2:1971408/150‑1 (MQ=255)                                                                                                        tgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAc                                  <  2:401882/150‑1 (MQ=255)                                                                                                        tgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAc                                  >  1:989824/1‑150 (MQ=255)                                                                                                             gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                            <  1:128094/103‑1 (MQ=255)                                                                                                             gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                            >  2:128094/1‑103 (MQ=255)                                                                                                              gtcgcgcAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGt                            >  1:264692/4‑150 (MQ=255)                                                                                                               tcgcgcAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTa                           <  2:264692/148‑1 (MQ=255)                                                                                                                  cgcAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTAcag                        <  1:2148332/150‑1 (MQ=255)                                                                                                                   gcAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTAcagc                       >  1:2269031/1‑150 (MQ=255)                                                                                                                     aGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTAcagcca                     >  1:684675/1‑150 (MQ=255)                                                                                                                       cccGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                               <  2:1750701/74‑1 (MQ=255)                                                                                                                       cccGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                               >  1:1750701/1‑74 (MQ=255)                                                                                                                       cccGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTAcagccagc                   >  2:1032079/1‑150 (MQ=255)                                                                                                                        ccGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACtgtg                                                                                                                   <  2:1588564/53‑1 (MQ=255)                                                                                                                        ccGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACtgtg                                                                                                                   >  1:1588564/1‑53 (MQ=255)                                                                                                                              gggCTGGGTGATCTCGTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGGACAGCCAGCGCCGCCt            <  2:989824/150‑1 (MQ=255)                                                                                                                              gggCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCa                              <  1:2050335/132‑1 (MQ=255)                                                                                                                              gggCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAATTCa                              >  2:2050335/1‑132 (MQ=255)                                                                                                                                gCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCTCAGGCTACACTCGCCCGCCCTGCCCCACACAATCCTTACTTCAGTACAGCCAGCGCCGCCTCg          <  2:803109/150‑1 (MQ=39)                                                                                                                                  tGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCAGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCt                                     <  1:679559/121‑1 (MQ=255)                                                                                                                                  tGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCAGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCt                                     >  2:679559/1‑121 (MQ=255)                                                                                                                                      tGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTAc                                                                 <  2:333954/89‑1 (MQ=255)                                                                                                                                      tGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTAc                                                                 >  1:333954/1‑89 (MQ=255)                                                                                                                                      tGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGcc                                                 <  2:641226/105‑1 (MQ=255)                                                                                                                                      tGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGcc                                                 >  1:641226/1‑105 (MQ=255)                                                                                                                                       gATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAAt                                        <  2:1170596/113‑1 (MQ=255)                                                                                                                                       gATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAAt                                        >  1:1170596/1‑113 (MQ=255)                                                                                                                                        aTCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCgg  <  1:1032079/150‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                      CCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTG‑AAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGG  >  NC_002947/4075650‑4075934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.