| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 362,748 | Δ1 bp | 11.1% | coding (738/966 nt) | lcdH ← | L‑carnitine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 362,748 | 0 | C | . | 11.1% | 125.5 / 12.5 | 45 | coding (738/966 nt) | lcdH | L‑carnitine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (21/19); new base . (3/2); total (24/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.74e-01 | |||||||||||
AGCGATGCTGCGCTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCG > NC_002947/362613‑362888 | aGCGATGCTGCGCTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCTAACTGTGACATGAAGTGACGCATGCCGGCAT‑CGcc > 1:286284/1‑150 (MQ=255) cgcTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAgg < 2:673375/150‑1 (MQ=255) cgcTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAgg < 1:25797/150‑1 (MQ=255) cgcTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGGGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGACGTGGGGCATGCCGGCAT‑CGCCACCGGCCAgg < 1:419483/150‑1 (MQ=255) gcTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAggg > 2:161774/1‑150 (MQ=255) cTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGt > 2:649997/1‑150 (MQ=255) cccTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAg < 1:649997/150‑1 (MQ=255) ccTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACACGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAgg > 1:725851/1‑150 (MQ=255) ggAAGTGCCGCTCACCACATCGTCTATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAtgt > 2:447518/1‑150 (MQ=255) ggAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAgg > 2:449175/1‑133 (MQ=255) ggAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAgg < 1:449175/133‑1 (MQ=255) tGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTaa > 1:416613/1‑138 (MQ=255) tGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTaa < 2:416613/138‑1 (MQ=255) ccGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGc > 2:524155/1‑145 (MQ=255) ccGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGc < 1:524155/145‑1 (MQ=255) cacaTCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCG‑ATGCCg > 1:99548/1‑99 (MQ=255) cacaTCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCG‑ATGCCg < 2:99548/99‑1 (MQ=255) gATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGa < 1:519815/138‑1 (MQ=255) gATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGa > 2:519815/1‑138 (MQ=255) gATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGcc > 2:318773/1‑150 (MQ=255) cGGTGCTGGCAGGTACGTCAAGGG‑AGCAGGTAGGGCTGGGCCGAACTGTGACATGAACTGGCGCAGGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGcgtc < 1:202158/150‑1 (MQ=255) tGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGc > 2:272714/1‑134 (MQ=255) tGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGc < 1:272714/134‑1 (MQ=255) aGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCg > 2:234534/1‑150 (MQ=255) gTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGaa > 1:453955/1‑102 (MQ=255) gTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGaa < 2:453955/102‑1 (MQ=255) tCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCgtgg < 1:161774/150‑1 (MQ=255) cAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCgtggtg > 2:622730/1‑150 (MQ=255) aGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGa > 1:76263/1‑76 (MQ=255) aGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGa < 2:76263/76‑1 (MQ=255) gC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAg < 1:726306/61‑1 (MQ=255) gC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAg > 2:726306/1‑61 (MQ=255) ttCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCgtg > 1:182172/1‑138 (MQ=255) ttCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCgtg < 2:182172/138‑1 (MQ=255) ttCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCcg > 1:623392/1‑150 (MQ=255) aGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAAGGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCcgtcg > 1:438480/1‑150 (MQ=255) ccGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAg > 2:449524/1‑47 (MQ=255) ccGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAg < 1:449524/47‑1 (MQ=255) gAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTg > 2:13719/1‑150 (MQ=255) gACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGcc < 1:318773/150‑1 (MQ=255) cATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTc < 2:486090/150‑1 (MQ=255) tGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTcgc < 2:623392/150‑1 (MQ=255) ccggTGGCG‑ATGCCGGCATGCGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTcgcg > 1:250058/4‑150 (MQ=255) gTGGCG‑ATGCCGGCATGCGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGcgtcgt < 1:88416/95‑1 (MQ=255) gTGGCG‑ATGCCGGCATGCGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGcgtcgt > 2:88416/1‑95 (MQ=255) | AGCGATGCTGCGCTCGCCCTGTTGCTCGGAAGTGCCGCTCACCACATCGTCGATCAGCTTGTCGGTCAGTTCCGGTGCTGGCAGGTACGTCCAGGGCAGC‑TTCAGGGCTGGGCCGAACTGTGACATGAAGTGGCGCATGCCGGCAT‑CGCCACCGGCCAGGGTATAGGTAAGGAATGTGCCCATGAACGACCAGCGCAAGCCTGCGCCAAAGCGAATCGCGTCGTCGATTTCGCCCGTGGTGGCAACTCCGTCGTTGACCAGGTGCAAGGCCTCGCG > NC_002947/362613‑362888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |