Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 43,461:1 | +A | 8.9% | intergenic (+27/+66) | PP_0040 → / ← cadA‑I | hypothetical protein/cadmium translocating P‑type ATPase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 43,461 | 1 | . | A | 8.9% | 165.5 / 11.2 | 45 | intergenic (+27/+66) | PP_0040/cadA‑I | hypothetical protein/cadmium translocating P‑type ATPase |
Reads supporting (aligned to +/- strand): ref base . (21/20); new base A (2/2); total (23/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.92e-01 |
AGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATG > NC_002947/43314‑43595 | aGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATc‑gc > 1:203253/1‑150 (MQ=255) aGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATc‑gc > 2:492048/1‑150 (MQ=255) tCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTCAGGCATCGCTGCCCTAGGTCGCGTACGGGCTATGCTTCGGC‑CTGGCTGTTCGGGATTTATGAGTGATAGAAAAGTACGGGTCGTGCGCTGATC‑gcgc < 2:689355/150‑1 (MQ=255) cGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCa < 2:203253/150‑1 (MQ=255) gtgtCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATc‑gc > 2:749561/1‑133 (MQ=255) gtgtCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATc‑gc < 1:749561/133‑1 (MQ=255) aTGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtacttctacttc > 1:493584/1‑150 (MQ=255) aTGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtacttctacttc > 1:425267/1‑150 (MQ=255) aGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGa < 1:272794/131‑1 (MQ=255) aGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGa > 2:272794/1‑131 (MQ=255) gCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGc > 1:559024/1‑150 (MQ=255) aTTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCtt > 1:249365/1‑150 (MQ=255) ggCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGc < 1:417335/150‑1 (MQ=255) cTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt > 1:86204/1‑150 (MQ=255) tCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGAt < 2:493584/150‑1 (MQ=255) tCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGAc < 1:381265/93‑1 (MQ=38) tCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGAc > 2:381265/1‑93 (MQ=38) gCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAg < 2:249365/150‑1 (MQ=255) gCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTCCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAg > 1:566183/1‑150 (MQ=255) cTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGcc > 1:350172/1‑150 (MQ=255) gAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTccc > 1:239936/1‑96 (MQ=255) gAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTccc < 2:239936/96‑1 (MQ=255) aaaGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtacttctactt > 1:733621/1‑82 (MQ=255) aaaGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtacttctactt < 2:733621/82‑1 (MQ=255) gCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGgc < 2:559024/150‑1 (MQ=255) ccTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTccc < 1:18215/91‑1 (MQ=255) ccTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTccc > 2:18215/1‑91 (MQ=255) tCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCa > 2:225368/1‑150 (MQ=255) tCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCGGCGTTGGGCCAAAAGGCGCa > 2:781750/1‑150 (MQ=255) aTCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt < 2:787329/98‑1 (MQ=255) aTCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt > 1:787329/1‑98 (MQ=255) tCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGa < 2:350172/150‑1 (MQ=255) ggATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAga > 1:274975/1‑150 (MQ=255) ggATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTCCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAga < 2:566183/150‑1 (MQ=255) cgacgaGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAgacgac < 2:274975/150‑1 (MQ=255) cgaGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCaa < 1:284023/150‑1 (MQ=255) aaaaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAg < 1:759042/86‑1 (MQ=255) aaaaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAg > 2:759042/1‑86 (MQ=255) aaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAgg < 1:165309/85‑1 (MQ=255) aaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAgg > 2:165309/1‑85 (MQ=255) gTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCt > 1:315325/1‑150 (MQ=255) gggTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGAGCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATg < 1:225368/150‑1 (MQ=255) ggTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGa < 2:464062/140‑1 (MQ=255) ggTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGa > 1:464062/1‑140 (MQ=255) gTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAgg > 1:190196/1‑96 (MQ=255) gTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAgg < 2:190196/96‑1 (MQ=255) gcTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGtgtg < 1:781923/130‑1 (MQ=255) gcTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGtgtg > 2:781923/1‑130 (MQ=255) tC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGaa < 2:566647/58‑1 (MQ=255) tC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGaa > 1:566647/1‑58 (MQ=255) | AGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGT‑GCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATG > NC_002947/43314‑43595 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |