New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3951114 =	31 (1.050)	4 (0.180)	3/190	NT	17.4%	intergenic (‑34/+161)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	3951230 =	14 (0.610)					intergenic (‑150/+45)	PP_3486/PP_3487	cytochrome c/hypothetical protein

CGGTCGGTGAGTATCATGGGCCGCCTGGGGAATTGGCCTCTGTGGCATCCGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3951284‑3951114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctttcgcgacgcaaggccgctcccacaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACA  >  NC_002947/3951230‑3951374                                                                                                                                                                                                                                                                                                                              CGGTCGGTGAGTATCATGGGCCGCCTGGGGAATTGGCCTCTGTGGCATCCGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCG                                                                                                                                                                        >  1:264161/1‑150  GGTCGGTGAGTATCATGGGCCGCCTGGGGAATTGGCCTCTGTGGCATCCGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGGTGCTGCGCAGCCCTTTCGC                                                                                                                                                                       >  1:196277/1‑150       GTGAGTATCATGGGCCGCCTGGGGAATTGGCCTCTGTGGCATCCGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGC                                                                                                                                                                  >  1:392343/1‑150                                                                              GAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGG                                                                                           >  2:720541/1‑150                                                                                    AGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCG                                                                                     >  1:281382/1‑150                                                                                                              GCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGG                                                           <  1:720541/150‑1                                                                                                              GCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGG                                                           <  2:281382/150‑1                                                                                                                                                 CTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTT                        >  2:292203/1‑150                                                                                                                                                      GCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCC                   >  1:286812/1‑150                                                                                                                                                      GCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCC                   >  2:628621/1‑150                                                                                                                                                                       CCACAAAAGCGGATGCCACAGAGGCCAATTCCTCACGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCACCGTTTACCTGCAACA  >  2:549208/1‑150                                                                                                                                                                       CCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGGGGCTGGGTCAACAGCTGCATGAGCTGAGCAATAGCGGCTGGCGGAGCAACAGCGCGAATCTTGCTCCAGCGTTTACATGCAACA  >  2:265373/1‑150                                                                                                                                                                          CAACAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGC                <  2:509366/133‑1                                                                                                                                                                          CAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGC                >  1:509366/1‑133                                                                                                                                                                                                                                                                                                                              CGGTCGGTGAGTATCATGGGCCGCCTGGGGAATTGGCCTCTGTGGCATCCGCTTTTGTGGGAGCGGCCTTGCGTCGCGAAAGGAGCGCGCAGCGCTCCCCTCTTTCTGCGCTTGAGCTGCCACTGCCGGGGCTGCTGCGCAGCCCTTTCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3951284‑3951114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctttcgcgacgcaaggccgctcccacaAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCGAATCTTGCTCCAGCGTTTACCTGCAACA  >  NC_002947/3951230‑3951374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.