New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5125160	43 (1.460)	4 (0.170)	4/194	NT	9.8%	intergenic (+86/‑96)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5125187	40 (1.720)					intergenic (+113/‑69)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease

CTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5125002‑5125160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCCAAAG  <  NC_002947/5125187‑5125040                                                                                                                                                                                                                                                                                                                     gaacactGCGGCGGTGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGC                                                                                                                                                               >  2:393158/8‑150                                              TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA                                                                                                                  >  1:755192/1‑150                                                   GGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGG                                                                                                             <  2:755192/150‑1                                                                                      GACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAG                                                                                                                    >  1:263274/1‑108                                                                                      GACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAG                                                                                                                    <  2:263274/108‑1                                                                                      GACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGG                                                                                                                                                                        >  1:40195/1‑56                                                                                      GACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGG                                                                                                                                                                        <  2:40195/56‑1                                                                                                                                        CGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCA                        <  2:16320/150‑1                                                                                                                                              TAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTG                                        <  1:646572/128‑1                                                                                                                                              TAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTG                                        >  2:646572/1‑128                                                                                                                                                   CCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGGAACTCATCAGTTATCGCCAGACTCTCGCCG             >  1:399212/1‑150                                                                                                                                                     GCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAG                                                                                    <  1:793954/77‑1                                                                                                                                                     GCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAG                                                                                    >  2:793954/1‑77                                                                                                                                                       TCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAA         <  2:359198/150‑1                                                                                                                                                              GGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCCAAAG  <  2:25729/150‑1                                                                                                                                                                                                                                                                                                                     CTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5125002‑5125160 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCCAAAG  <  NC_002947/5125187‑5125040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.