New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5759460 =	26 (0.880)	5 (0.230)	4/182	NT	24.9%	intergenic (+13/+143)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	5759552 =	11 (0.500)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

TGCAGGAAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5759637‑5759460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCG  >  NC_002947/5759552‑5759697                                                                                                                                                                                                                                                                                                                                      TGCAGGAAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAG                                                                                                                                                                                <  2:153101/150‑1       AAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                                                                                          <  1:709125/150‑1          CGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTT                                                                                                                                                                       <  1:61287/150‑1             GTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTAC                                                                                                                                                                    <  2:364682/150‑1               GAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCC                                                                                                                                                                  <  1:324277/150‑1                    GCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACCGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                             <  1:542627/150‑1                            TGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCG                                                                                                                                                     >  2:481906/1‑150                            TGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGGAAACCCGCTCCTACCGGCGATTGCGCCGTTCCCTCGGTCTGCGTAGGCACGGGGTTACCCGCGGGGAGGCCCG                                                                                                                                                     >  1:183004/1‑150                             GCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGC                                                                                                                                                    >  1:57671/1‑150                                GTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCC                                                                                                                                                      >  1:19434/1‑145                                GTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCC                                                                                                                                                      <  2:19434/145‑1                                                             TCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                                                                                          >  1:60006/1‑96                                                             TCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                                                                                          <  2:60006/96‑1                                                                                                            CCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCT                                                                     >  1:397508/1‑150                                                                                                             CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTT                                                                    <  2:397508/150‑1                                                                                                             CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTT                                                                    >  2:51886/1‑150                                                                                                             CCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTT                                                                    >  2:192860/1‑150                                                                                                               GCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCC                                                                  >  1:473480/1‑150                                                                                                                                                             GTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTT                                                                                                               >  1:486138/1‑59                                                                                                                                                             GTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTT                                                                                                               <  2:486138/59‑1                                                                                                                                                                 ACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGA                <  1:399120/150‑1                                                                                                                                                                         AGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCA        <  2:473480/150‑1                                                                                                                                                                             GCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGC    >  2:433011/1‑150                                                                                                                                                                             GCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGACGAAGTTGACCGGCGACAGCATCAGCGC    >  2:282949/1‑150                                                                                                                                                                               CCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCG  >  1:45846/1‑150                                                                                                                                                                                                                                                                                                                                      TGCAGGAAGCGGGTGAAGCGCCTACTGTGCAGTAATTACTGCCGGTTTCAAGAAAGCGCCTCTCGGGGCGCTTTTTTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5759637‑5759460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggcccgcGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGTCGAAGTTGACCGGCGACAGCATCAGCGCCG  >  NC_002947/5759552‑5759697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.