| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5870345 | 31 (1.050) | 5 (0.220) | 5/188 | NT | 14.2% | intergenic (+50/+84) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | = 5870380 | 37 (1.640) | intergenic (+85/+49) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||
CCAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5870168‑5870345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtgaacccgctcctacCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCGCTCAACCA < NC_002947/5870380‑5870234 CCAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGG < 1:155633/150‑1 CCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGGAACAGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCT > 2:626205/1‑150 CCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGC > 2:335282/1‑148 CCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGC < 1:335282/148‑1 CAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTC > 1:134842/1‑150 ACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGG < 1:120915/150‑1 ACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGG < 2:268936/150‑1 CGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTC > 2:477990/1‑150 AGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCT < 1:357820/150‑1 TGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACA > 1:686882/1‑150 TGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGG < 1:186740/120‑1 TGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGG > 2:186740/1‑120 GGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTTCACCCGCga < 1:433270/121‑3 GGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTTCACCCGCga > 2:433270/1‑119 GGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAG < 1:477152/150‑1 TTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGA < 2:686882/150‑1 TGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAG < 1:404199/150‑1 GGCCTTTTGGCGGGCATTTGGGGGAAATTGAGCTGTTGGTCTGTGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCG < 1:86110/150‑1 gatatCCTCTTCGCGGATGAACCCGCTCCTACCACTTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCC < 1:148395/145‑1 GGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAA < 2:331527/123‑1 GGCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAAAATCAAATACTCAGACCAA > 1:331527/1‑123 GCCTCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGAC > 1:171155/1‑119 GCCGCTTCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGAC < 2:171155/119‑1 TCGCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGC < 2:254716/150‑1 GCGGGTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCC < 2:269956/150‑1 GTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGACGTTGTAGGAGCGG > 1:130038/1‑61 GTGAACCCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGACGTTGTAGGAGCGG < 2:130038/61‑1 gagggCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGAAAAACAAATAAATTTGCCCCAAATACCCGCCAAAATCCCCGAAACTGCGC > 1:626205/6‑150 CCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACCGCCAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGC > 1:49372/1‑138 CCGCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGC < 2:49372/138‑1 GCTCCTACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCGCTC > 2:632922/1‑150 TACCACGTACACACATGTGGGGTTGGACCCAGGCCGTTGTAGCAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATAATCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCGCTCAACCA < 2:58719/150‑1 TACCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGACCGAAACTGCGCTCAACCA > 1:72726/1‑150 CCAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5870168‑5870345‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtgaacccgctcctacCACGTACACACATCTGGGGTTGGACCCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGAACAGACAACATCAAATACTCAGACCAACAACTCAATTTCCCCCAAATGCCCGCCAAAAGGCCCGAAACTGCGCTCAACCA < NC_002947/5870380‑5870234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |