| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 445062 = | 34 (1.150) | 9 (0.390) | 9/192 | NT | 25.9% | intergenic (+32/‑256) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| ? | NC_002947 | 445155 = | 25 (1.090) | intergenic (+125/‑163) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase | |||||
CATGGCCACCAGTGTCGTGCAACAGGCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCA > NC_002947/444916‑445207 | tgagttctgtggggtgacccgcgcttggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCtt > 2:673875‑M1/147‑150 (MQ=255) ttctgtggggtgacccgcgcttggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatagactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAg < 2:26624‑M1/8‑1 (MQ=255) ctgtggggtgacccgcgcttggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGa < 2:452395‑M1/10‑1 (MQ=255) gtggggtgacccgcgcttggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGc > 1:564055‑M1/139‑150 (MQ=255) caGTGTCGTGCAACAGGCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCg > 1:769981/1‑150 (MQ=255) aGTGTCGTGCAACAGGCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCgg < 2:180336/150‑1 (MQ=255) gTGCAACAGGCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGc < 2:88760/150‑1 (MQ=255) ccgcgcttggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGccc < 1:342547‑M1/22‑1 (MQ=255) cgcgcttggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCcg < 2:431623‑M1/23‑1 (MQ=255) cAGGCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCAAGCCcgctc < 1:397380/150‑3 (MQ=255) cgCGGTGGGCACGCCCGCAATCGAGCTCGTCTCCAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAt < 2:769981/149‑1 (MQ=255) tggcggaagccgatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCaagcccgctccta > 1:188090‑M1/122‑145 (MQ=255) gCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCATACCTTGTAGGAGCGGGCTTGGCCGCGAATGCGTCCGa > 2:208739/1‑150 (MQ=255) gatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGt < 2:231200‑M1/6‑1 (MQ=255) gatcaaacagttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGt > 1:231200‑M1/111‑116 (MQ=255) aCCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGa < 1:368069/150‑1 (MQ=255) gttgtttgaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAAtt < 2:547658‑M1/49‑1 (MQ=255) gttgtttgaaacttacgtttagctcagctttctgtcaaggatagactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAAtt > 1:26624‑M1/102‑150 (MQ=255) tCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTc < 2:617880/150‑1 (MQ=255) gaaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTg > 1:547658‑M1/95‑150 (MQ=255) gcgcAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTgg > 1:98946/1‑150 (MQ=255) aaacttacgtttagctcagctttctgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTgg < 2:377471‑M1/57‑1 (MQ=255) aGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGc < 1:605506/150‑1 (MQ=255) cgtcAAGGCATCCGACGAGATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGAGTCCGATCAGACAACAATTTTGTCTGGTCGGGCctct < 2:767478/150‑1 (MQ=255) tcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCtt > 2:30364/1‑99 (MQ=255) tcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCtt < 1:30364/99‑1 (MQ=255) gctcagctttctgtcaaggatggactatggtgccatttacgccccgcaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTcg > 1:377471‑M1/81‑150 (MQ=255) aaGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTcgc < 1:210705/150‑1 (MQ=255) aGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAg < 2:777143/86‑1 (MQ=255) aGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAg > 1:777143/1‑86 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCgg > 1:532729/1‑150 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGcc > 1:106920/1‑150 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGAAAGcc < 2:532729/150‑1 (MQ=255) tgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTcgc < 1:788719‑M1/71‑1 (MQ=255) tgtcaaggatggactatggtgccatttacgccacgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTcgc > 2:788719‑M1/70‑140 (MQ=255) gACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCGTGCCCGCGAATACGTCCGTTCCGACAACAAATTTGACTGGTCAGGCCTCTTCCAGGGCAAGCCCGCTCCTACAAGGGTTTGtggcat > 2:562375/1‑150 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatg < 2:106920/150‑1 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatg < 1:567320/150‑1 (MQ=255) cTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGTGGCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTggcatggcat > 1:250431/1‑150 (MQ=255) tACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGgcatggcatg > 2:465909/1‑150 (MQ=255) acgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCctct < 2:171208‑M1/67‑1 (MQ=255) acgaaaaatggcaaatcagtcatgccatgccacaaacCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCctct > 1:171208‑M1/38‑104 (MQ=255) tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatgg > 2:279038/1‑140 (MQ=255) tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatgg < 1:279038/140‑1 (MQ=255) gTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTTCCAttttt > 1:151784/1‑150 (MQ=255) aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCTCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGt < 1:208739/150‑1 (MQ=255) tCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTg > 2:31357/1‑150 (MQ=255) cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc < 1:445076/150‑1 (MQ=255) ccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAAGCGTCCGATCAGAAAAAAAATTTGTCTGGTCGGGCCTCTTTGCGGGCAAGCCCCCTCCTACAAGGGGTTGTGGCATGGCATGACTGGTTTTCCAtttttttttggg > 2:797291/1‑143 (MQ=37) cTATTTCCGCGGCTGCCTTGTAGGAGCGGTCTTGCCCGCGAATGCGTCCGATGAGACAACAATTTTATCTGGTCGGGCCTTTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGt < 2:98946/150‑1 (MQ=38) tttCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggca > 2:549480/1‑115 (MQ=255) tttCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggca < 1:549480/115‑1 (MQ=255) cctgcctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCgg < 1:7837/77‑1 (MQ=255) cctgcctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCgg > 2:7837/1‑77 (MQ=255) cctgcctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCa < 1:797291/150‑1 (MQ=255) | CATGGCCACCAGTGTCGTGCAACAGGCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCA > NC_002947/444916‑445207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |