New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	786595 =	46 (1.560)	5 (0.190)	5/224	NT	12.5%	intergenic (+14/‑291)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	786703 =	28 (1.040)					intergenic (+122/‑183)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor

CCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCC  >  NC_002947/786447‑786741                                                                                                                                                     |                                                                                                                                                   ccgatcgccccggcacgcggtggccagtgggatgtgtttacggggtgtcattgaacaaagtcgaccattctacgccaacgcgcggcgttgcataggaggggccgatggtggggtgtgatcagttcggtcactgggatgaattcattgcCt                                                                                                                                                   >  1:10493‑M1/149‑150 (MQ=255)         cccggcacgcggtggccagtgggatgtgtttacggggtgtcattgaacaaagtcgaccattctacgccaacactcagcgttgcataggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcCTGTGCCGGc                                                                                                                                           <  2:551086‑M1/10‑1 (MQ=255)                 agcagcAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTcgc                                                                                                                                   <  1:347181/150‑1 (MQ=255)                     gcaACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGc                                                                                                                               >  2:66192/1‑150 (MQ=255)                        aCCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCg                                                                                                                            >  2:499077/1‑150 (MQ=255)                          cTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGcc                                                                                                                          >  1:707445/1‑150 (MQ=255)                             cccGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGc                                                                                                                       >  2:158829/1‑150 (MQ=255)                              ccGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCt                                                                                                                      >  2:724463/1‑150 (MQ=255)                                  aGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCca                                                                                                                  <  2:54389/150‑1 (MQ=255)                                      gcggcTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAgg                                                                                                              >  1:282562/1‑150 (MQ=255)                                           ttCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCAGGGCCTGCCGCGGGCTCGCCCGCTCCCACCGGAATcg                                                                                                         >  2:63496/1‑150 (MQ=255)                                           gtCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATcg                                                                                                         >  2:733221/2‑150 (MQ=255)                                             cAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATcgcg                                                                                                       <  1:158829/150‑1 (MQ=255)                                                  attgaacaaagtcgaccattctacgccaacgcgcggcgttgcataggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcc                                                                                                                                                    <  1:587072‑M1/1‑1 (MQ=255)                                                  attgaacaaagtcgaccattctacgccaacgcgcggcgttgcataggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcc                                                                                                                                                    >  2:587072‑M1/100‑100 (MQ=255)                                                       tCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGa                                                                                                     <  1:55833/142‑1 (MQ=255)                                                       tCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGa                                                                                                     >  2:55833/1‑142 (MQ=255)                                                              gggCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCtgt                                                                                      <  2:377805/150‑1 (MQ=255)                                                                     gcgcCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTc                                                                                                                     <  1:600340/112‑1 (MQ=255)                                                                     gcgcCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTc                                                                                                                     >  2:600340/1‑112 (MQ=255)                                                                         cTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgt                                                                           >  2:117811/1‑150 (MQ=255)                                                                             ccGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGa                                                                       <  1:711340/150‑1 (MQ=255)                                                                                aGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCg                                                                    <  1:145026/150‑1 (MQ=255)                                                                                 gCATGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCgg                                                                   <  1:733221/150‑1 (MQ=255)                                                                                 gCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATcgc                                                                                                        >  1:786039/1‑113 (MQ=255)                                                                                 gCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATcgc                                                                                                        <  2:786039/113‑1 (MQ=255)                                                                                 gCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCCCGGCCGCGCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCgg                                                                   <  2:506807/150‑1 (MQ=255)                                                                                   aGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGc                                                                 >  1:718156/1‑150 (MQ=255)                                                                                    gggCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCa                                                                <  1:601597/150‑1 (MQ=255)                                                                                     ggCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCAt                                                               >  1:406030/1‑150 (MQ=255)                                                                                       gttgcataggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGc                                                             >  1:622861‑M1/63‑150 (MQ=255)                                                                                             ttGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCcgcgg                                                       >  2:414282/1‑149 (MQ=255)                                                                                             taggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTgg                                                                         <  2:78293‑M1/76‑1 (MQ=255)                                                                                             taggaggggccgatggtggggtgtgatcagtgcggtcactgggatgaattcattgcCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTgg                                                                         >  1:78293‑M1/57‑132 (MQ=255)                                                                                                ccgccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAaga                                                    <  1:117811/150‑1 (MQ=255)                                                                                                ccgccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAaga                                                    <  2:104030/150‑1 (MQ=255)                                                                                                  gccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGa                                                                       >  2:391296/1‑129 (MQ=255)                                                                                                  gccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGa                                                                       <  1:391296/129‑1 (MQ=255)                                                                                                   ccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGc                                                 <  2:470573/150‑1 (MQ=255)                                                                                                    cTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCAGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGcc                                                <  2:377507/150‑1 (MQ=255)                                                                                                           ggggCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAg                                         <  2:536951/150‑1 (MQ=255)                                                                                                                aaGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAAt                                    <  1:499077/150‑1 (MQ=255)                                                                                                                      aaaCAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTc                              >  1:551086/1‑150 (MQ=255)                                                                                                                       aaCAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                          >  1:120292/1‑105 (MQ=255)                                                                                                                       aaCAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                          <  2:120292/105‑1 (MQ=255)                                                                                                                        aCAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCAt                            <  2:406030/150‑1 (MQ=255)                                                                                                                                    tgggatgaattcattgcCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAACCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGc                                                                     >  1:682563‑M1/18‑97 (MQ=255)                                                                                                                                    tgggatgaattcattgcCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAACCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGc                                                                     <  2:682563‑M1/80‑1 (MQ=255)                                                                                                                                      gAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCAc              <  2:190260/150‑1 (MQ=255)                                                                                                                                      gAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCAc              <  2:718156/150‑1 (MQ=255)                                                                                                                                        gTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTg            <  2:282562/150‑1 (MQ=255)                                                                                                                                         tctcTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                          >  2:236921/1‑87 (MQ=255)                                                                                                                                         tctcTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                          <  1:236921/87‑1 (MQ=255)                                                                                                                                          ctctTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGAt          <  2:660432/150‑1 (MQ=255)                                                                                                                                               cGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGTTAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCacac     <  2:707445/150‑1 (MQ=255)                                                                                                                                                  ctgctgTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACAcccc  <  2:730644/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCGGCCAAGGCGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGCTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCC  >  NC_002947/786447‑786741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.