New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1436103 =	37 (1.250)	4 (0.140) +A	3/244	NT	10.1%	intergenic (‑133/+20)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	6060492 =	35 (1.180)					intergenic (+72/+109)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

CCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAAGTGC  >  NC_002947/1435957‑1436237                                                                                                                                                   |                                                                                                                                       ccTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAg                                                                                                                                     >  1:224028/1‑150 (MQ=255)    gtgAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGga                                                                                                                                  <  1:714071/150‑1 (MQ=255)           tgaTGGAGCCTCCTTGTAAATCTAATGCAGATGCATGGGGGGGATTACGACCCATGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGt                                                                                                                           <  2:85872/148‑1 (MQ=255)              gggaGCCTCCTTGGAAATCTACTGCATATGCATGGGGGAGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGCGCCCGCCCCCTCCCACAGTGAGAGCAGTGgc                                                                                                                        <  2:33/147‑1 (MQ=37)                       ctTGGAAATCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGc                                                                                                               >  1:506036/1‑150 (MQ=255)                        ttGGAAATCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCg                                                                                                              >  1:483592/1‑150 (MQ=255)                               tCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGtttt                                                                                                       >  2:784969/1‑150 (MQ=255)                                   aTGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTc                                                                                                   >  1:470948/1‑150 (MQ=255)                                      cAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGc                                                                                                <  1:77336/150‑1 (MQ=255)                                             aTGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGt                                                                                                                           >  1:437132/1‑116 (MQ=255)                                             aTGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGt                                                                                                                           <  2:437132/116‑1 (MQ=255)                                                   gggATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTgg                                                                                                                         >  1:337915/1‑112 (MQ=255)                                                   gggATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTgg                                                                                                                         <  2:337915/112‑1 (MQ=255)                                                      aTTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATAc                                                                                >  2:317069/1‑150 (MQ=255)                                                             ccccTGTAGGAGCGGGTTCCCCCGCGAACACCGACGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGCCTGCCAAGGGCATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGc                                                                         <  1:384065/150‑1 (MQ=25)                                                              cccTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGc                                                                                        >  1:504566/1‑134 (MQ=255)                                                              cccTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGc                                                                                        <  2:504566/134‑1 (MQ=255)                                                                cTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGtt                                                                                                         >  1:537187/1‑115 (MQ=255)                                                                cTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGtt                                                                                                         <  2:537187/115‑1 (MQ=255)                                                                   tAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACa                                                                   >  1:275789/1‑150 (MQ=255)                                                                     ggAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAgc                                                                 <  2:637494/150‑1 (MQ=255)                                                                       aGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAgcgc                                                               <  2:660328/150‑1 (MQ=255)                                                                            gTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTAct                                                          <  2:735883/150‑1 (MQ=255)                                                                                aCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTg                                                                                                      >  1:82533/1‑102 (MQ=255)                                                                                aCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTg                                                                                                      <  2:82533/102‑1 (MQ=255)                                                                                  ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTc                                                                                                   >  1:451883/1‑103 (MQ=255)                                                                                  ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTc                                                                                                   <  2:451883/103‑1 (MQ=255)                                                                                  ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGcc                                                                                               <  1:152894/107‑1 (MQ=255)                                                                                  ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGcc                                                                                               >  2:152894/1‑107 (MQ=255)                                                                                   cgcgAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTc                                                   <  2:506036/150‑1 (MQ=255)                                                                                                 aaGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCt                                     >  2:62164/1‑150 (MQ=255)                                                                                                   gCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGa                                   >  1:586279/1‑150 (MQ=255)                                                                                                         cccATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCg                             <  2:696600/149‑1 (MQ=255)                                                                                                                        gCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGtc              <  2:586279/150‑1 (MQ=255)                                                                                                                                cgcgGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGaa      <  2:796625/150‑1 (MQ=255)                                                                                                                                    ggCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAAGTGc  <  1:784969/150‑1 (MQ=255)                                                                                                                                         gCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGc                                                                                                     <  2:646430/46‑1 (MQ=255)                                                                                                                                         gCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGc                                                                                                     >  1:646430/1‑46 (MQ=255)                                                                                                                                                   |                                                                                                                                       CCTGTGAGGGGCATGTAGCCTCCTTGGAAATCTAATGCAGATGCATGGGGGGGATTACGACCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGGGTCGCCTGATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAAGTGC  >  NC_002947/1435957‑1436237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.