New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 213751732 (1.080)4 (0.140) 4/234 NT 11.0% coding (334/624 nt) gstB glutathione S‑transferase
?NC_002947 = 2137523 34 (1.210)coding (340/624 nt) gstB glutathione S‑transferase

CTTGTGGGAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTACCTGTCCGGTGACCAGATCGGCATGGGC  >  NC_002947/2137369‑2137666
                                                                                                                                                    |                                                                                                                                                     
ctTGTGGGAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCCTTCCTTCCCCt                                                                                                                                                      >  1:235365/1‑150 (MQ=255)
ctTGTGGGAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCt                                                                                                                                                      >  2:577412/1‑150 (MQ=255)
      ggAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTg                                                                                                                                                >  2:332968‑M2/1‑149 (MQ=255)
      ggAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCCGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTg                                                                                                                                                <  2:381199‑M2/150‑2 (MQ=255)
       gAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTgg                                                                                                                                               >  1:50159‑M2/1‑148 (MQ=255)
       gAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTgg                                                                                                                                               <  2:667236‑M2/150‑3 (MQ=255)
                            tACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGaa                                                                                                                          <  2:775039/150‑1 (MQ=255)
                            tACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGaa                                                                                                                          <  1:679012/150‑1 (MQ=255)
                              ccTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCgg                                                                                                                            <  1:500400/146‑1 (MQ=255)
                              ccTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCgg                                                                                                                            >  2:500400/1‑146 (MQ=255)
                               cTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGAc                                                                                                                       <  1:577412/150‑1 (MQ=255)
                                           tACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTgggg                                                                                                                                             <  1:281484‑M2/116‑5 (MQ=255)
                                           tACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTgggg                                                                                                                                             >  2:281484‑M2/1‑112 (MQ=255)
                                               gCACGGAGCAGCGCTGGTATCTGGCAGCTGAACGGCAGCGCTCCCTCGGTGACAAATGCATTGGCGTGAGTACATCTTCCGGCGCTACTCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTgg                                                                                                       >  2:209869/1‑150 (MQ=255)
                                                          ggCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAAcgcc                                                                                            >  2:238677/1‑150 (MQ=255)
                                                               gTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGca                                                                                       <  2:723090/150‑1 (MQ=255)
                                                                          aCCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCAc                                                                                                                                 <  1:165278/97‑1 (MQ=255)
                                                                          aCCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCAc                                                                                                                                 >  2:165278/1‑97 (MQ=255)
                                                                            ccACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTgcgcg                                                                          >  2:80630/1‑150 (MQ=255)
                                                                            ccACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCAGAACAggggccggaatggg                                                                                                                                   <  1:453544‑M2/93‑15 (MQ=255)
                                                                            ccACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCAGAACAggggccggaatggg                                                                                                                                   >  2:453544‑M2/1‑79 (MQ=255)
                                                                            ccACGCCAGCGCGCCCTGGCCGACAAATGGAAGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGa                                                                                                    <  2:288679/124‑1 (MQ=255)
                                                                            ccACGCCAGCGCGCCCTGGCCGACAAATGGAAGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGa                                                                                                    >  1:288679/1‑124 (MQ=255)
                                                                               cGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCaa                                                                       <  2:22827/150‑1 (MQ=255)
                                                                                            tGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGTTAGGGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTg                                                          <  1:209869/150‑1 (MQ=255)
                                                                                            tGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACt                                                                  >  1:674967/1‑142 (MQ=255)
                                                                                            tGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACt                                                                  <  2:674967/142‑1 (MQ=255)
                                                                                                       tggatggaCTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGTGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAAcc                                               <  1:28825/150‑1 (MQ=255)
                                                                                                       tggatggaCTCGACCACATAATCCTTCGCTGCACCATTACGGTAACAGTTGGTGGGTCTTCTGCCCACGGCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAAcc                                               <  2:372803/150‑1 (MQ=255)
                                                                                                        ggatggaCTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAAccc                                              >  2:22867/1‑150 (MQ=255)
                                                                                                            ggactggacCACATCGTCCTTCGCTACCCCATTCCGGCCCCagaacaggggccg                                                                                                                                          <  1:302190‑M1/54‑14 (MQ=255)
                                                                                                            ggactggacCACATCGTCCTTCGCTACCCCATTCCGGCCCCagaacaggggccg                                                                                                                                          >  2:302190‑M1/1‑41 (MQ=255)
                                                                                                                tggacCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTgg                                                                                                           >  2:205113/1‑81 (MQ=255)
                                                                                                                tggacCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTgg                                                                                                           <  1:205113/81‑1 (MQ=255)
                                                                                                                         tCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGTCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTTGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTAc                             <  2:266781/150‑1 (MQ=255)
                                                                                                                           gTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTACCt                           <  2:235365/150‑1 (MQ=255)
                                                                                                                             ccTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTa                              <  1:579835/145‑1 (MQ=255)
                                                                                                                             ccTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTa                              >  2:579835/1‑145 (MQ=255)
                                                                                                                               ttCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTAc                             >  1:688821/1‑144 (MQ=255)
                                                                                                                               ttCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTAc                             <  2:688821/144‑1 (MQ=255)
                                                                                                                                     aCCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCGCGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTgg                                                                <  1:351036/103‑1 (MQ=255)
                                                                                                                                     aCCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCGCGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTgg                                                                >  2:351036/1‑103 (MQ=255)
                                                                                                                                       cccATTCCGGCCCCtgttctggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgg                                                                        >  2:453544‑M1/1‑14 (MQ=255)
                                                                                                                                       cccATTCCGGCCCCtgttctggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgg                                                                        <  1:453544‑M1/93‑80 (MQ=255)
                                                                                                                                          aTTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTACCTGTCCGGTGACCAGAt            <  1:667236/150‑1 (MQ=255)
                                                                                                                                            tCCGCCCCCTGTTCTGGGGCCTTCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACCAAACCCTGGCCAGTCAGCCGTACCTGTCCGGTGACCAGATCg          <  1:381199/150‑1 (MQ=255)
                                                                                                                                              cGGCCCCTGTTCTggggccggaatggggtagcgaaggacgatgtggtccagtcc                                                                                                        <  1:302190‑M2/54‑42 (MQ=255)
                                                                                                                                              cGGCCCCTGTTCTggggccggaatggggtagcgaaggacgatgtggtccagtcc                                                                                                        >  2:302190‑M2/1‑13 (MQ=255)
                                                                                                                                                gCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTACCTGTCCGGTGACCAGATCGGCAt      >  1:70540/1‑150 (MQ=255)
                                                                                                                                                 ccccagaacaggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgggtctgccagataccagccctgctccgtgccgta                                       >  2:281484‑M1/1‑4 (MQ=255)
                                                                                                                                                 ccccagaacaggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgggtctgccagataccagccctgctccgtgccgta                                       <  1:281484‑M1/116‑113 (MQ=255)
                                                                                                                                                   ccagaacaggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgggtctgccagataccagccctgctccgtgccgtactccgcgcacaggtagcggacgatggtgttggattc   >  1:50159‑M1/1‑2 (MQ=255)
                                                                                                                                                   ccagaacaggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgggtctgccagataccagccctgctccgtgccgtactccgcgcacaggtagcggacgatggtgttggattc   <  2:667236‑M1/150‑149 (MQ=255)
                                                                                                                                                    cagaacaggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgggtctgccagataccggccctgctccgtgccgtactccgcgcacaggtagcggacgatggtgttggattcc  <  2:381199‑M1/150‑150 (MQ=255)
                                                                                                                                                    cagaacaggggccggaatggggtagcgaaggacgatgtggtccagtccatccatttgtcggccagggcgcgctggcgtgggtctgccagataccagccctgctccgtgccgtactccgcgcacaggtagcggacgatggtgttggattcc  >  2:332968‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CTTGTGGGAATCCAACACCATCGTCCGCTACCTGTGCGCGGAGTACGGCACGGAGCAGGGCTGGTATCTGGCAGACCCACGCCAGCGCGCCCTGGCCGACAAATGGATGGACTGGACCACATCGTCCTTCGCTACCCCATTCCGGCCCCTGTTCTGGGGCCTGCTGCGCACGCCGGAAGACCAGCGCGACTGGGTGGCGATCAACGCCGCGCACAAGCAGTGCGCGCAATTACTGGCCATTGCCGACGAAACCCTGGCCAGTCAGCCGTACCTGTCCGGTGACCAGATCGGCATGGGC  >  NC_002947/2137369‑2137666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.