| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4165525 | 21 (0.710) | 5 (0.180) | 5/234 | NT | 20.0% | coding (621/1335 nt) | PP_3666 | MHS family metabolite MFS transporter |
| ? | NC_002947 | = 4165541 | 20 (0.710) | coding (605/1335 nt) | PP_3666 | MHS family metabolite MFS transporter | |||||
GCGCCGGTGCTGGCCCAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCCCGCCGCCGTGCTGGCCGGCACGATGCTGGTGTACAAGCCACGCCGC > NC_002947/4165384‑4165669 | gcgcCGGTGCTTGCCCAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCcagcag < 1:339858/150‑1 (MQ=255) gcCGGTGCTGGCCCAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGa > 1:515317/1‑150 (MQ=255) gCTGGCCCAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCa < 2:722896/150‑1 (MQ=255) ccAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGACCTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCtgccgttcctgctggcggcgcc < 2:231273‑M1/150‑23 (MQ=255) ccAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAggcgcc < 1:763853‑M2/150‑7 (MQ=255) gcgcAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTc > 2:630845/1‑150 (MQ=255) cggcgTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAg < 2:763853/150‑1 (MQ=255) cTTGGTTTCCAGGCGCTGCTCCATCTCCAGCATCTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGCCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTc < 1:202936/150‑1 (MQ=255) cAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCtgccgttcctgctggcggcgccgttc > 2:24140‑M1/1‑82 (MQ=255) cAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCtgccgttcctgctggcggcgccgttc < 1:24140‑M1/108‑27 (MQ=255) cAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCAc > 1:790128/1‑150 (MQ=255) cAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCAc > 2:599208/1‑150 (MQ=255) cAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAggcgcc > 1:727532‑M2/1‑80 (MQ=255) cAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAggcgcc < 2:727532‑M2/86‑7 (MQ=255) ttGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGaacaac < 2:608367/150‑1 (MQ=255) gtgtCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAAcccc < 2:790128/150‑1 (MQ=255) gtgtCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAAcccc < 2:515317/150‑1 (MQ=255) cTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAAc > 1:141889/1‑58 (MQ=255) cTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAAc < 2:141889/58‑1 (MQ=255) tGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCtgccgttcctgctggcggcgccgttcg > 1:328026‑M1/1‑45 (MQ=255) tGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCtgccgttcctgctggcggcgccgttcg < 2:328026‑M1/72‑28 (MQ=255) tGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCccgccgcc > 1:707005/1‑150 (MQ=255) tGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCccgccgcc > 2:571095/1‑150 (MQ=255) ataGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGa > 1:232039/1‑80 (MQ=255) ataGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGa < 2:232039/80‑1 (MQ=255) cGAACGGCGCCGCCAGCAGGAACGGCAggcgccgttcggcctggtagggcgctatatccgcatgagcttgca < 2:328026‑M2/72‑46 (MQ=255) cGAACGGCGCCGCCAGCAGGAACGGCAggcgccgttcggcctggtagggcgctatatccgcatgagcttgca > 1:328026‑M2/1‑27 (MQ=255) cGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCCCGCCGCCGTGCTGGCCGGCACGATGCt > 1:96671/1‑136 (MQ=255) cGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCCCGCCGCCGTGCTGGCCGGCACGATGCt < 2:96671/136‑1 (MQ=255) gAACGGCGCCGCCAGCAGGAACGGCAggcgccgttcggcctggtagggcgctatatccgcatgagcttgcaggacacgcccaagttcctggagatggagcagcgcctg > 2:24140‑M2/1‑26 (MQ=255) gAACGGCGCCGCCAGCAGGAACGGCAggcgccgttcggcctggtagggcgctatatccgcatgagcttgcaggacacgcccaagttcctggagatggagcagcgcctg < 1:24140‑M2/108‑83 (MQ=255) gAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCCCGCCGCCGTGCTGGCCGGCACGATGCTGGTGTACAAGCCAcg > 1:687076/1‑150 (MQ=255) aCGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCCCGCCGCCGTGCTGGCCGGCACGATGCTGGTGTACAAGCCGcgcc > 2:398652/1‑150 (MQ=255) ggCGCCtgccgttcctgctggcggcgccgttcggcctggtagggcgctatatccgcatgagcttgcaggacacgcccaagttcctggagatggagcagcgcctggaaaccaaggccggcatggccacgacgccgctgcgcgaactgctgg < 1:763853‑M1/150‑145 (MQ=255) ggCGCCtgccgttcctgctggcggcgccgttcggcctggtagggcgctatatccgcatgagcttgcaggacacgcccaagttcctg < 2:727532‑M1/86‑81 (MQ=255) ggCGCCtgccgttcctgctggcggcgccgttcggcctggtagggcgctatatccgcatgagcttgcaggacacgcccaagttcctg > 1:727532‑M1/1‑6 (MQ=255) ggCGCCGCCAGCAGGAACGGCAggcgccgttcggcctggtagggcgctatatccgcatgagcttgcaggacacgcccaaggtcctggagatggagcagcgcctggaaaccaaggccggcatggccacgacgccgctgcgcgaactgctgg < 2:231273‑M2/150‑129 (MQ=255) | GCGCCGGTGCTGGCCCAGCAGTTCGCGCAGCGGCGTCGTGGCCATGCCGGCCTTGGTTTCCAGGCGCTGCTCCATCTCCAGGAACTTGGGCGTGTCCTGCAAGCTCATGCGGATATAGCGCCCTACCAGGCCGAACGGCGCCGCCAGCAGGAACGGCAGGCGCCAGCCCCACTCATGCAGGGCTTCACTGCTGAGCAGCTCATGCAGCACCGCGACGAACGCCGCACCGAACAACAACCCCGCCGCCGTGCTGGCCGGCACGATGCTGGTGTACAAGCCACGCCGC > NC_002947/4165384‑4165669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |