| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5196440 | 21 (0.710) | 4 (0.150) | 4/226 | NT | 17.3% | coding (123/690 nt) | ybgJ | allophanate hydrolase subunit 1 |
| ? | NC_002947 | = 5196465 | 19 (0.700) | coding (98/690 nt) | ybgJ | allophanate hydrolase subunit 1 | |||||
GGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCG > NC_002947/5196291‑5196588 | gggATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCG > 1:401007‑M1/1‑150 (MQ=255) gcggcCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCaa > 2:292478/1‑150 (MQ=255) cTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTg > 1:524358/1‑150 (MQ=255) ccTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGccagccggcgcttgagcgcggcgttcg < 2:381629‑M1/150‑28 (MQ=255) tgtgTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggc > 2:401007‑M2/1‑146 (MQ=255) aGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggcgagcat < 2:517311‑M2/150‑11 (MQ=255) tGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCAt < 1:46000/150‑1 (MQ=255) cAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGccagccggcgcttgagcgcggcgttcggcgagcatttgctg < 2:176965‑M1/150‑42 (MQ=255) aGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCa > 1:32299/1‑150 (MQ=255) cgcCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGGCTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATACTCGCCGAACGCCGCGCTCAAGCGCAGGCTGGCGGCGAGCATCCATGGCATGTTGACCTc > 2:107139/1‑150 (MQ=255) ccTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGccagccggcgcttgagcgcggcgttcggcga > 2:484671‑M1/1‑95 (MQ=255) ccTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGccagccggcgcttgagcgcggcgttcggcga < 1:484671‑M1/126‑32 (MQ=255) ccTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCAt > 2:384316/1‑150 (MQ=255) aGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGAt < 1:517311/150‑1 (MQ=255) gCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATa < 1:250295/150‑1 (MQ=255) ccTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAg < 1:249045/150‑1 (MQ=255) ccTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGNGAGCATNCATGGCATGTTGNCCTCATCGATACGGTCGAACAGGCGTa < 1:768145/150‑1 (MQ=255) cTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCa < 1:384316/150‑1 (MQ=255) ggCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAgg < 2:32299/150‑1 (MQ=255) ggCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAgg > 1:329367/1‑150 (MQ=255) gCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATg < 2:580309/150‑1 (MQ=255) cAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggc > 2:225855‑M2/1‑81 (MQ=255) cAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggc < 1:225855‑M2/85‑5 (MQ=255) aCTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGa > 2:460836/1‑150 (MQ=255) ccATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACtt < 1:460836/150‑1 (MQ=255) tataAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGACTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCt > 1:577194/1‑150 (MQ=255) aCGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTtcatca > 2:614843/1‑150 (MQ=255) ccAGGTCCAGCAAATGCTCGCCGAACGCCGCGCCAAATCCAGGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTc < 1:439565/150‑1 (MQ=255) cAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctgccctggcgccaggcgaggccagggcgcgaatcgctcaggcgctggacggcttg < 2:176965‑M2/150‑110 (MQ=255) cAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCa > 2:738817/1‑150 (MQ=255) aaTGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAg < 2:524358/150‑1 (MQ=255) aTGCTCGCCGccagccggcgcttgagcgcggcgttcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctgccctggcgccaggcgaggccagggcgcgaatcgctcaggcgctggacggcttgcagcct < 2:517311‑M1/150‑141 (MQ=255) tCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctgccctggcgccaggcgaggccagggcgcgaatcgctcagg > 2:484671‑M2/1‑31 (MQ=255) tCGCCGAACGCCGCGCTCAAGCGCCGGCTGGcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctgccctggcgccaggcgaggccagggcgcgaatcgctcagg < 1:484671‑M2/126‑96 (MQ=255) gccgccagccggcgcttgagcgcggcgttcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctgccctggcgccaggcgaggccagggcgcgaatcgctcaggcgctggacggcttgcagcctgacaca > 2:401007‑M1/1‑4 (MQ=255) gccgccagccggcgcttgagcgcggcgttcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctg > 2:225855‑M1/1‑4 (MQ=255) gccgccagccggcgcttgagcgcggcgttcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctg < 1:225855‑M1/85‑82 (MQ=255) cGAACGCCGCGCTCAAGCGCCGGCTGGcggcgagcatttgctggacctggtgccgtcttatactacgctgatggtgcagtctgccctggcgccaggcgaggccagggcgcgaatcgctcaggcgctggacggcttgcagcctgacacagg < 2:381629‑M2/150‑124 (MQ=255) | GGGATCTCGTGTCGGCGGCCGCCACTGCCTGTGTCAGGCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCG > NC_002947/5196291‑5196588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |