New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5513315	24 (0.810)	6 (0.260)	5/194	NT	22.7%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513371	22 (0.950)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

GACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGC  >  NC_002947/5513169‑5513462                                                                                                                                                   |                                                                                                                                                    gACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAccc                                                                                                                                                  >  2:654753/1‑150 (MQ=255)   ccATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCg                                                                                                                                                >  1:656937/1‑150 (MQ=255)         gACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTa                                                                                                                                          >  1:147779/1‑150 (MQ=255)          aCCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAcccc                                                                                                                                                 >  2:638516/1‑142 (MQ=255)          aCCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAcccc                                                                                                                                                 <  1:638516/142‑1 (MQ=255)                           gAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCAt                                                                                                                        <  2:147779/150‑1 (MQ=255)                             gtgtGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGAGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgg                                                                                                                      <  2:123151/150‑1 (MQ=255)                                tgCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGc                                                                                                                   >  2:421204/1‑150 (MQ=255)                                  cTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCgg                                                                                                                 >  2:315114/1‑150 (MQ=255)                                  cTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCgg                                                                                                                 <  1:421204/150‑1 (MQ=255)                                   tGGCGGAAGGCTCGCGGTAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGt                                                                                                                >  1:27164/1‑150 (MQ=255)                                     gCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTc                                                                                                              <  2:421640/150‑1 (MQ=255)                                            gCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAccccgttcctacgacgggaaccgccccatggcattacgcccactgt                                                                                                       <  2:179000‑M1/150‑47 (MQ=255)                                             cTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTa                                                                                                      >  1:161537/1‑150 (MQ=255)                                              tCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtag                                                                                                     >  1:310363‑M1/1‑102 (MQ=255)                                                gCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGa                                                                                                   >  2:285028/1‑150 (MQ=255)                                                         ggTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggtta                                                                                          <  1:593228‑M1/150‑60 (MQ=255)                                                          gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttac                                                                                         <  1:273125‑M2/150‑5 (MQ=255)                                                          gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGAATAGATATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttac                                                                                         <  1:655414‑M2/150‑5 (MQ=255)                                                           tGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacc                                                                                        <  2:310363‑M1/150‑62 (MQ=255)                                                           ggcaggtagaTGAGCGGGTGGTCGAGGTGTATCTGGTCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacc                                                                                        <  2:159745‑M1/149‑62 (MQ=255)                                                                 cagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaa                                                                                  <  2:279437‑M1/150‑68 (MQ=255)                                                                 cagATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaa                                                                                  >  1:285028‑M2/1‑139 (MQ=255)                                                                     tGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagagg                                                                              >  1:315114‑M2/1‑135 (MQ=255)                                                                               gtCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTCCAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacagg                                                                    >  1:654753‑M2/1‑125 (MQ=255)                                                                                tCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggc                                                                   <  1:666613‑M2/150‑27 (MQ=255)                                                                                  aaGGTCTATCTGGGCCTCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacaggcac                                                                 >  2:198518/2‑150 (MQ=255)                                                                                     gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGc                                                              >  1:287788/1‑150 (MQ=255)                                                                                     gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGc                                                              >  2:379190/1‑150 (MQ=255)                                                                                        tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaa                                                                                  <  2:353066‑M2/127‑12 (MQ=255)                                                                                        tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaa                                                                                  >  1:353066‑M2/1‑116 (MQ=255)                                                                                        tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATc                                                           <  1:302877/150‑1 (MQ=255)                                                                                           cTGGGCCGCTGCCAGGCTTTGATCTTCTCTCTCCCGTTCCGCGCTCTTCTTGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCt                                                        <  2:287788/150‑1 (MQ=25)                                                                                             gggCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCttt                                                      <  2:656937/150‑1 (MQ=255)                                                                                                        cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggcc                                                                            <  1:479693‑M2/117‑18 (MQ=255)                                                                                                        cGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggcc                                                                            >  2:479693‑M2/1‑100 (MQ=255)                                                                                                          gATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTcac                                         >  1:658485/1‑150 (MQ=255)                                                                                                                          gcCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcga                         <  1:666613‑M1/150‑125 (MQ=255)                                                                                                                           ccTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactggaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgac                        >  1:654753‑M1/1‑25 (MQ=255)                                                                                                                                  cgacctctTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                              >  1:390944‑M1/4‑18 (MQ=255)                                                                                                                                  cgacctctTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggg                                                                                              <  2:390944‑M1/70‑56 (MQ=255)                                                                                                                                  cGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCGGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTTCAc                 >  2:253819/1‑150 (MQ=255)                                                                                                                                  cGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCAc                 >  1:690127/1‑150 (MQ=255)                                                                                                                                   ggCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccg                                                 >  2:479693‑M1/1‑17 (MQ=255)                                                                                                                                   ggCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccg                                                 <  1:479693‑M1/117‑101 (MQ=255)                                                                                                                                     ccTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctca              >  1:315114‑M1/1‑15 (MQ=255)                                                                                                                                     ccTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg              <  1:198518/150‑1 (MQ=255)                                                                                                                                      ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATg                                                                                                                       >  2:604805/1‑44 (MQ=255)                                                                                                                                      ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATg                                                                                                                       <  1:604805/44‑1 (MQ=255)                                                                                                                                      ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGt             >  2:788039/1‑150 (MQ=255)                                                                                                                                         ttCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctg          >  1:285028‑M1/1‑11 (MQ=255)                                                                                                                                         ttCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagata                                 <  2:353066‑M1/127‑117 (MQ=255)                                                                                                                                         ttCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagata                                 >  1:353066‑M1/1‑11 (MQ=255)                                                                                                                                         ttCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctg          <  2:279437‑M2/150‑84 (MQ=255)                                                                                                                                              gggTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcggc     >  1:39993/1‑150 (MQ=255)                                                                                                                                               ggTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgca    <  2:310363‑M2/150‑90 (MQ=255)                                                                                                                                               ggTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggaccagatacacctcgaccacccgctcatctacctgcc    <  2:159745‑M2/150‑90 (MQ=255)                                                                                                                                                gTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac   <  1:273125‑M1/150‑147 (MQ=255)                                                                                                                                                gTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaatatctattcggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac   <  1:655414‑M1/150‑147 (MQ=255)                                                                                                                                                 tAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcacc  <  1:593228‑M2/150‑92 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGC  >  NC_002947/5513169‑5513462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.