New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5599566	38 (1.290)	6 (0.210)	6/234	NT	14.1%	coding (3967/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5599598	37 (1.320)					coding (3935/5418 nt)	PP_4924	subtilase family serine protease

AGCTTCCACTCCCCAGCCGAGCGCTCTGCGCGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAACCTGTTGAGCCACTGGTTC  >  NC_002947/5599418‑5599713                                                                                                                                                     |                                                                                                                                                    aGCTTCCACTCCCCAGCCGAGCGCTCTGCGCGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCa                                                                                                                                                    <  2:656981/150‑1 (MQ=255)               aGCCGAGCGCTCTGCGCGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGt                                                                                                                                      >  1:156582/1‑150 (MQ=255)                   gAGCGCTCTGCGCGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGc                                                                                                                                  <  2:681515/150‑1 (MQ=255)                      cgcTCTGCGCGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCaggcgacatgacgctcacgctg                                                                                                                               <  2:786791‑M1/150‑23 (MQ=255)                            gcgcGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCATGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCg                                                                                                                         >  2:465569/1‑150 (MQ=255)                             cgcgATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGGGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCATGCGACACCAGCGTGAGCGTCATGTCGc                                                                                                                        <  2:489278/150‑1 (MQ=255)                                   gatgGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCttggcgacatgacgctcacgctggtgtcgcctggc                                                                                                                  <  2:702763‑M1/150‑36 (MQ=255)                                             cATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCAGGTCGCCAAGGCGGCCGACCAt                                                                                                        >  2:409529/1‑150 (MQ=255)                                                   cccATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTg                                                                                                  <  2:379515/150‑1 (MQ=255)                                                    ccATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTg                                                                                                  <  2:544621/149‑1 (MQ=255)                                                    ccATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTg                                                                                                  >  1:544621/1‑149 (MQ=255)                                                         tttGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCa                                                                                                         <  2:257471/137‑1 (MQ=255)                                                         tttGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCa                                                                                                         >  1:257471/1‑137 (MQ=255)                                                         tttGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTg                                                                                                  >  2:546141/1‑144 (MQ=255)                                                         tttGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTg                                                                                                  <  1:546141/144‑1 (MQ=255)                                                            gAACGCCCCTGTGCGCTAATCGCCCAGATCGTCATCACCAGAGCCCGCCGGCTTGGCTGTGCGATCGAGCAGTACGCTGGGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAAc                                                                                         <  2:187796/150‑1 (MQ=255)                                                            gAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAAc                                                                                         >  1:101075/1‑150 (MQ=255)                                                             aaCGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGcc                                                                                                                       >  2:436445/1‑119 (MQ=255)                                                             aaCGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGcc                                                                                                                       <  1:436445/119‑1 (MQ=255)                                                                 ccccTGAACGCGAATCGCCCAGATCGTAGTCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCca                                                                                    >  1:619792/1‑150 (MQ=255)                                                                 ccccTGAACGCAACTAGCCGATAGCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCca                                                                                    >  2:793668/1‑150 (MQ=255)                                                                  cccTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGAcc                                                                                                          <  2:385767/127‑1 (MQ=255)                                                                  cccTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGAcc                                                                                                          >  1:385767/1‑127 (MQ=255)                                                                          gcgAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCaggcgacatgacgctcacgctggtgtcgc                                                                                                                        <  1:546308‑M1/105‑30 (MQ=255)                                                                          gcgAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCaggcgacatgacgctcacgctggtgtcgc                                                                                                                        >  2:546308‑M1/1‑76 (MQ=255)                                                                            gAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAAc                                                                                         >  2:240402/1‑134 (MQ=255)                                                                            gAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAAc                                                                                         <  1:240402/134‑1 (MQ=255)                                                                                  cccAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCaaa                                                                   <  2:156582/150‑1 (MQ=255)                                                                                    cAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCttggcgacatgacgctcacgctggtg                                                                                                                           >  2:133520‑M1/1‑66 (MQ=255)                                                                                    cAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCttggcgacatgacgctcacgctggtg                                                                                                                           <  1:133520‑M1/92‑27 (MQ=255)                                                                                    cAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCACCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATc                                                                 <  2:450517/150‑1 (MQ=255)                                                                                        tCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGcc                                                             <  1:669731/150‑1 (MQ=255)                                                                                                aCCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAgg                                                                                                                                                  >  2:316094/1‑57 (MQ=255)                                                                                                aCCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAgg                                                                                                                                                  <  1:316094/57‑1 (MQ=255)                                                                                                          ggCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGcc                                                             <  2:712336/132‑1 (MQ=255)                                                                                                          ggCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGcc                                                             >  1:712336/1‑132 (MQ=255)                                                                                                               cTTGCCCGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAg                                                                                                                    >  1:776557‑M2/1‑71 (MQ=255)                                                                                                               cTTGCCCGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAg                                                                                                                    <  2:776557‑M2/72‑2 (MQ=255)                                                                                                                ttGCCTGTGCGATAGAGCAGTACTCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCa                                     >  2:669879/1‑150 (MQ=255)                                                                                                                       tgCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATc                                                                                                       <  1:47209/77‑1 (MQ=255)                                                                                                                       tgCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATc                                                                                                       >  2:47209/1‑77 (MQ=255)                                                                                                                        gCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGc                                                                               <  1:44094/100‑1 (MQ=255)                                                                                                                        gCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGc                                                                               >  2:44094/1‑100 (MQ=255)                                                                                                                            tCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTAATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCccgcc                         <  2:619792/150‑1 (MQ=255)                                                                                                                                 cAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCACCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAAc                    <  1:409529/150‑1 (MQ=255)                                                                                                                                  aGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAAcc                   >  1:94658/1‑150 (MQ=255)                                                                                                                                    tACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAACCTg                 >  1:362011/1‑150 (MQ=255)                                                                                                                                            gcatGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAACCTGTTGAGCCa         <  1:465569/147‑1 (MQ=255)                                                                                                                                             cgTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAACCTGTTGAGCCAc        <  1:793668/150‑1 (MQ=255)                                                                                                                                                   gccAGGCGACACCAGCGTGAGCGTCATGTCGCCAAggcggcacgcgcagcgtactgctcgatcgcacaggcaaggcgccgggctctggtgatgacgatctgggcgattcgcgttcaggggcgttcaaatatgggttcatgtcgacccatc  <  2:702763‑M2/150‑116 (MQ=255)                                                                                                                                                     cttggcgacatgacgctcacgctggtgtcgcctggcggcacgcgcagcgtactgctcgatcgcacgggcaag                                                                              <  2:776557‑M1/72‑72 (MQ=255)                                                                                                                                                     cttggcgacatgacgctcacgctggtgtcgcctggcggcacgcgcagcgtactgctcgatcgcacgggcaag                                                                              >  1:776557‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCTTCCACTCCCCAGCCGAGCGCTCTGCGCGATGATGGGTCGACATGAACCCATATTTGAACGCCCCTGAACGCGAATCGCCCAGATCGTCATCACCAGAGCCCGGCGCCTTGCCTGTGCGATCGAGCAGTACGCTGCGCGTGCCGCCAGGCGACACCAGCGTGAGCGTCATGTCGCCAAGGCGGCCGACCATCGAGTGGACATCAACCTCCACATGCTCCACCAGCAAATCAGCCGGCAGGGTCAAAGACAAAGTCGCAACCTGCCCCGCCGCAACCTGTTGAGCCACTGGTTC  >  NC_002947/5599418‑5599713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.