New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	222180 =	35 (1.180)	3 (0.110)	3/224	NT	9.0%	coding (35/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
	?	NC_002947	222241 =	29 (1.080)					coding (96/1020 nt)	PP_0170	ABC transporter substrate‑binding protein

ACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCG  >  NC_002947/222094‑222386                                                                                                                                                    |                                                                                                                                                  aCCGCCCCACCACCCAGGGCGATGCCCCGTTCTGACGATTGAGGAAACCATCATGCGCAAACCCATCGGCCGCTTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTGGCCGCCCCCGCCGTGGCCCAGGCCGAAgg                                                                                                                                                 <  1:605409/150‑1 (MQ=255)   cGCACCAACATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCAATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCa                                                                                                                                               >  1:388066/1‑150 (MQ=255)    gCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCaa                                                                                                                                              >  2:420244/1‑150 (MQ=255)       ccaccaTCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGGCGTGGCCCAGGCCGAAGGCAAGAt                                                                                                                                           <  2:579386/150‑1 (MQ=255)         accaTCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATcc                                                                                                                                         >  2:315342/1‑150 (MQ=255)           caTCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGt                                                                                                                                       >  2:690230/1‑150 (MQ=255)               cAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTg                                                                                                                                   >  2:103574/1‑150 (MQ=255)                aGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTAGCCCAGGCCAAAGGCAAGATCCGTATTGc                                                                                                                                  >  1:11905/1‑150 (MQ=255)                 gggCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGcc                                                                                                                                 <  1:631070/150‑1 (MQ=255)                    cGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGaa                                                                                                                              <  2:444859/150‑1 (MQ=255)                                     gacTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTa                                                                                                             >  2:147931/1‑150 (MQ=255)                                              aaCCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACctgctgct                                                                                                    >  2:379162/1‑150 (MQ=255)                                                     atGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACgtg                                                                                             <  2:266934/150‑1 (MQ=255)                                                      tGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACgtgg                                                                                            <  1:103574/150‑1 (MQ=255)                                                       gcgcAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt                                                                                           <  2:272888/150‑1 (MQ=255)                                                       gcgcAAATCCATCAGCCGCCTGGCGGCAAGCAGCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt                                                                                           <  2:325802/150‑1 (MQ=255)                                                              tCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGAc                                                                                    >  1:252369/1‑150 (MQ=255)                                                                      ccgccTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCt                                                                            >  1:163328/1‑150 (MQ=255)                                                                            ggcggcAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTga                                                                      <  2:109674/150‑1 (MQ=255)                                                                             gcggcAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTgag                                                                     <  1:420244/150‑1 (MQ=255)                                                                               ggcAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTgag                                                                     >  2:281758/1‑148 (MQ=255)                                                                               ggcAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTgag                                                                     <  1:281758/148‑1 (MQ=255)                                                                                gcAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACTCGCGGCGTGACCAGCACCTGATTGAGaaa                                                                  <  1:419464/150‑1 (MQ=255)                                                                                          GCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAgg                                                        >  2:163328‑M1/1‑150 (MQ=255)                                                                                            ctgggccacggcgggggcggctaggctgccgacgaccaggcttgcgcccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAAc                                                                                                >  1:165813‑M2/57‑108 (MQ=255)                                                                                            ctgggccacggcgggggcggctaggctgccgacgaccaggcttgcgcccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAAc                                                                                                <  2:165813‑M2/52‑1 (MQ=255)                                                                                                 ccacggcgggggcgactaggctgccgacgaccaggcttgcgcccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAggg                                                 >  2:552354‑M2/52‑150 (MQ=255)                                                                                                 CGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAggg                                                 <  1:534530‑M1/150‑1 (MQ=255)                                                                                                       ccTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCAACTGATTGAGAAACACGGCAAGGAGCAGGGcatcga                                           <  2:132258/150‑1 (MQ=255)                                                                                                               tcgGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAg                                   <  1:147931/150‑1 (MQ=255)                                                                                                               tcgGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAg                                   >  1:180518/1‑150 (MQ=255)                                                                                                                     gCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGAtt                             <  2:180518/150‑1 (MQ=255)                                                                                                                      ccTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt                                                                                           >  1:486769/1‑87 (MQ=255)                                                                                                                      ccTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACgtggt                                                                                           <  2:486769/87‑1 (MQ=255)                                                                                                                       ttAGCCGCCCCCGCCGTGGCCCAGGCCGGAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTgg                           <  2:11905/149‑1 (MQ=255)                                                                                                                         aGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGgc                         >  1:334454/1‑150 (MQ=255)                                                                                                                                       tGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTg           <  1:315342/150‑1 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACct                                                                                                          <  1:736103‑M2/42‑1 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACct                                                                                                          >  2:736103‑M2/10‑51 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAg                                                   <  2:310960‑M2/97‑1 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAg                                                   >  1:310960‑M2/10‑106 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTg                            <  1:502043‑M2/120‑1 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTg                            >  2:502043‑M2/10‑129 (MQ=255)                                                                                                                                           ccaggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTc       >  2:550994‑M2/10‑150 (MQ=255)                                                                                                                                            caggccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGTGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCg      >  2:146101‑M2/9‑150 (MQ=255)                                                                                                                                                ccgaAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCg  >  1:92092‑M2/5‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ACCGCACCACCATCCAGGGCGATGCCCCGTTCTGACGACTGAGGAAACCATCATGCGCAAATCCATCAGCCGCCTGGCGGCAAGCATCGGCCTGGGCGCAAGCCTGGTCGTCGGCAGCCTAGCCGCCCCCGCCGTGGCCCAGGCCGAAGGCAAGATCCGTATTGCCGAACAATTCGGCATCGTCTACCTGCTGCTGAACGTGGTGCGTGACCAGCACCTGATTGAGAAACACGGCAAGGAGCAGGGCATCGACATCGAAGTCGATTGGGCGCAGCTGTCGGGTGGCTCGGCCG  >  NC_002947/222094‑222386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.