New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	235331 =	39 (1.320)	4 (0.160)	4/214	NT	12.7%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	21 (0.820)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase

GCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCA  >  NC_002947/235244‑235512                                                                                                                                                   |                                                                                                                           gCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGAACCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCGACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGc                                                                                                                         >  1:760548/1‑150 (MQ=255)         ggAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAAc                                                                                                                 >  2:77222/1‑150 (MQ=255)             gCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAgg                                                                                                             <  2:492464/150‑1 (MQ=255)             gCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAgg                                                                                                             <  2:652808/150‑1 (MQ=255)               gTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGc                                                                                                           <  1:77222/150‑1 (MQ=255)                 cGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGa                                                                                                         >  1:224247/1‑150 (MQ=255)                               aTGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTATGGGGCCGTTCGCGCGCATGCCCGTTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                           <  1:85422/150‑1 (MQ=39)                                         tCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCg                                                                                 <  2:147792/150‑1 (MQ=255)                                          ccGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCga                                                                                <  2:565915/150‑1 (MQ=255)                                                     aGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAg                                                                     >  2:68020/1‑150 (MQ=255)                                                         cTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGcc                                                                 >  2:593975/1‑150 (MQ=255)                                                           gAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCtt                                                               <  2:763402/150‑1 (MQ=255)                                                                tGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCac                                                          <  1:68020/150‑1 (MQ=255)                                                                         gCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACgg                                                 >  2:653005/1‑150 (MQ=255)                                                                          cccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTGGTGGAAACTTGTGCATTAACTGTGAGAGCAGGCGTGCCCTCGAACAAGGCCGACGCCCTCGCCGTGGGGCATTAGCCAGACGCCAACAGCGCCTTGCCACGAacgacgcc                                                >  2:65086/1‑148 (MQ=255)                                                                                 cgGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGc                                                                                                                         <  2:780645/70‑1 (MQ=255)                                                                                 cgGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGc                                                                                                                         >  1:780645/1‑70 (MQ=255)                                                                                  gggCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAgcacgca                                        >  1:192256/1‑150 (MQ=255)                                                                                     cATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCt                                     <  1:268044/150‑1 (MQ=255)                                                                                               cccacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGc                                                                           <  2:450049‑M2/50‑1 (MQ=255)                                                                                               cccacaggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCATCGCCTTGGGGGATTAGCGAGACGc                                                                           >  1:450049‑M2/53‑102 (MQ=255)                                                                                               CCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcgc                           >  2:192256‑M1/1‑150 (MQ=255)                                                                                                CCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGGGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcgcc                          <  1:383976‑M1/150‑1 (MQ=255)                                                                                                CCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCcgc                                                                                                                     <  2:542152‑M1/59‑1 (MQ=255)                                                                                                CCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCcgc                                                                                                                     >  1:542152‑M1/1‑59 (MQ=255)                                                                                                 CACAGGTCTGCACCGTTTTTTTAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgccggcgccg                         <  2:55566‑M1/150‑1 (MQ=255)                                                                                                  ACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGt                        <  1:46946‑M1/150‑1 (MQ=255)                                                                                                   caggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagca                                            >  1:783435‑M2/49‑129 (MQ=255)                                                                                                   caggtaatgcacaagtttcaaaaacggtgcagacctgtgggagcgggcGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGgcagca                                            <  2:783435‑M2/81‑1 (MQ=255)                                                                                                    AGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTac                      >  2:224247‑M1/1‑150 (MQ=255)                                                                                                       TCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAacgac                                                   <  2:415201‑M1/118‑1 (MQ=255)                                                                                                       TCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAacgac                                                   >  1:415201‑M1/1‑118 (MQ=255)                                                                                                           cACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAt               <  1:593975/150‑1 (MQ=255)                                                                                                           cACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAAAAAGGCCTGGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAt               >  2:620252/1‑150 (MQ=255)                                                                                                                        aCTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCa  >  1:783175/1‑150 (MQ=255)                                                                                                                            gtgCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgcc                                <  2:262602/116‑1 (MQ=255)                                                                                                                            gtgCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTgcgcc                                >  1:262602/1‑116 (MQ=255)                                                                                                                                                   |                                                                                                                           GCGGACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCA  >  NC_002947/235244‑235512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.