New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5877063	34 (1.150)	3 (0.130)	3/198	NT	8.4%	intergenic (+29/+76)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	= 5877097	38 (1.600)					intergenic (+63/+42)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

CAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTG  >  NC_002947/5876953‑5877246                                                                                                                                                 |                                                                                                                                                       cAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCCTTGGGATCCCtgtag                                                                                                                                                   <  2:797329‑M2/150‑6 (MQ=255)         tGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggt                                                                                                                                           <  2:78844‑M2/150‑14 (MQ=255)           ttCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggttt                                                                                                                                         >  1:739761‑M2/1‑135 (MQ=255)              gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacc                                                                                                                                      >  2:357699‑M2/1‑132 (MQ=255)                 gcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgc                                                                                                                                   <  2:469975‑M2/150‑22 (MQ=255)                         ggcggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGc                                                                                                                           <  1:797329/150‑1 (MQ=255)                            ggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCt                                                                                                                        >  2:66747/1‑150 (MQ=255)                             gATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTg                                                                                                                       >  1:446276/1‑150 (MQ=255)                               tCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCCCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGAc                                                                                                                     >  2:792417/1‑150 (MQ=255)                               tCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGGAAACCCGCTCCTACAAGGTACCCCACCCGCCCGGAACCCTGGCGATCCCTGTAGGAGCGGGGTTACCCGCGAACAGGCCCCGAc                                                                                                                     >  2:792439/1‑150 (MQ=255)                                   ctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGc                                                                                                                 <  1:659534/150‑1 (MQ=255)                                    tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑g                                                                                                               <  1:78844/150‑1 (MQ=255)                                          tgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GAtcagt                                                                                                         <  1:438388/150‑1 (MQ=255)                                          tgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GAtcagt                                                                                                         <  2:660798/150‑1 (MQ=255)                                            ggCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GAtcagtca                                                                                                       <  2:143120/150‑1 (MQ=255)                                              cACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCATTCGCGGGTAAACCCACTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATcagtcagt                                                                                                     >  2:90285/1‑150 (MQ=255)                                                 cGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGGCTGGAACCGTGGCGATCCCTGTAGGAGCGGGATTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCgg                                                                                                  >  1:252492/1‑150 (MQ=255)                                                   cTGAAGGCGTGAAGAGCGTGAAGGCCGAGTAAAACCCTCCGTGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGGCAGTCGgct                                                                                                <  1:130770/150‑1 (MQ=255)                                                      aaGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACCGGCCCTGACAGGC‑GATCAGTCAGTCGgctgct                                                                                             <  1:469975/150‑1 (MQ=255)                                                           gTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAac                                                                                        <  1:792417/150‑1 (MQ=255)                                                           gTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAac                                                                                        <  1:792439/150‑1 (MQ=255)                                                            tGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACACGCGAACAGGCCCTGCCAGCC‑GATCCGTCAGCCAGCTGCTTGAaca                                                                                       >  2:780023/1‑150 (MQ=255)                                                             gAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg                                                                                                                                            <  1:118768‑M2/97‑13 (MQ=255)                                                             gAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg                                                                                                                                            >  2:118768‑M2/1‑85 (MQ=255)                                                             gAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAacac                                                                                      >  1:161952/1‑150 (MQ=255)                                                                gagCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCCGGAACCCTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACCGGCGGTTCAG‑CAGTTGGCTGCTTGAACAAATa                                                                                   >  2:791837/1‑150 (MQ=38)                                                                   ccTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAg                                                                                  >  2:170500/1‑148 (MQ=255)                                                                   ccTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAg                                                                                  <  1:170500/148‑1 (MQ=255)                                                                    cTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAAc                                                                               >  1:781307/1‑150 (MQ=255)                                                                    cTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAAc                                                                               <  2:733065/150‑1 (MQ=255)                                                                          gCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTc                                                                         <  1:3085/150‑1 (MQ=255)                                                                          gCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTc                                                                         >  2:421122/1‑150 (MQ=255)                                                                            cGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                                                       <  2:183096/150‑1 (MQ=255)                                                                                             gggTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                                                       <  1:254686/133‑1 (MQ=255)                                                                                             gggTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                                                       >  2:254686/1‑133 (MQ=255)                                                                                                    cccGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacag                                                <  1:149548‑M2/150‑105 (MQ=255)                                                                                                     ccGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgcagcgaacagg                                               <  2:416595‑M2/150‑106 (MQ=255)                                                                                                     ccGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTcccc                                              <  1:421122/150‑1 (MQ=255)                                                                                                     ccGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCCCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTcccc                                              >  1:617332/1‑150 (MQ=255)                                                                                                            tACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgttgg                                        >  2:149548‑M2/1‑38 (MQ=255)                                                                                                            tACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAgg                                                                                                                            >  2:249787/1‑66 (MQ=255)                                                                                                            tACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAgg                                                                                                                            <  1:249787/66‑1 (MQ=255)                                                                                                            tACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcat                                       >  1:723660/1‑150 (MQ=255)                                                                                                                aGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatccat                                   <  2:723660/150‑1 (MQ=255)                                                                                                                 ggTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatccatc                                  <  1:66747/150‑1 (MQ=255)                                                                                                                       ccACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTCCCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATc                            <  2:23702/150‑1 (MQ=255)                                                                                                                           cGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCt                        <  2:152110/150‑1 (MQ=255)                                                                                                                                        gggCGATCTCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCAc           <  2:252492/149‑1 (MQ=255)                                                                                                                                            gATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGgct                                                                                                >  1:245024/1‑61 (MQ=255)                                                                                                                                            gATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGgct                                                                                                <  2:245024/61‑1 (MQ=255)                                                                                                                                            gATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GAGCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTc       >  1:615643/1‑150 (MQ=255)                                                                                                                                              tCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGgc                                                                                                 >  2:506530/1‑58 (MQ=255)                                                                                                                                              tCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGgc                                                                                                 <  1:506530/58‑1 (MQ=255)                                                                                                                                              tCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGc     >  2:302132/1‑150 (MQ=255)                                                                                                                                                ccTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCt   <  1:370947/150‑1 (MQ=255)                                                                                                                                                ccTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGATCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCt   <  1:90285/150‑1 (MQ=255)                                                                                                                                                 cTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTg  >  1:523472/1‑150 (MQ=255)                                                                                                                                                 cTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCACACTGACCAGGTAAATGGCCCCCGCTTCATCCATCGCCATCCCCTCCGCCTGCGCCACCGTCGCCTg  >  2:273088/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                       CAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGC‑GATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTG  >  NC_002947/5876953‑5877246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.