Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 975,291 | A→T | 14.0% | intergenic (+137/+32) | ycfJ → / ← suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 975,291 | 0 | A | T | 14.0% | 110.9 / 11.4 | 43 | intergenic (+137/+32) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
Reads supporting (aligned to +/- strand): ref base A (18/19); new base T (3/3); total (21/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.01e-01 |
GGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTC > NC_002947/975145‑975424 | gggTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAagag < 2:12487/150‑1 (MQ=255) gggTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACAAGGAACAAAAAAGCACCTCAagag < 2:12535/150‑1 (MQ=255) tCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTg > 1:496747/1‑150 (MQ=255) tGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑ttt < 1:718167/150‑1 (MQ=255) ccGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCATTCTg > 2:246329/1‑150 (MQ=255) ccGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTg > 2:795320/1‑150 (MQ=255) cGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGAAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCAGAAAAAAGCACCTCAAGAGGTGC‑TTTTTGGTTGCCGGCAATCTgc > 2:280194/1‑150 (MQ=255) ggTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCa > 1:293122/1‑150 (MQ=255) aaCCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCt < 2:496747/150‑1 (MQ=255) aCCCGATCCTACAGGGGCAATGCGATCCATGCAGGCGGCGCTACACGGGCGAAGAGTTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCtt < 1:775968/150‑1 (MQ=255) cccGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCttt > 2:96440/1‑150 (MQ=255) tCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTtttgt < 1:645167/111‑1 (MQ=255) tCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTtttgt > 2:645167/1‑111 (MQ=255) ccTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCACTTATGGCTTCGTGCTGGCTGGCa < 2:195923/150‑1 (MQ=39) cTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAg < 2:453850/150‑1 (MQ=255) tACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTtttgttt < 2:87304/110‑1 (MQ=255) tACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTtttgttt > 1:87304/1‑110 (MQ=255) cggCAATGCGATCCATGTAGGAGCGTGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAACGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCgg < 1:553330/149‑1 (MQ=255) gCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCt > 1:552085/1‑150 (MQ=255) cAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTg > 1:259866/1‑150 (MQ=255) tGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGAt < 1:211083/150‑1 (MQ=255) aTCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGca < 2:293122/150‑1 (MQ=255) aTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCTTGAGGTGC‑ttttt < 1:751977/87‑1 (MQ=255) aTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCTTGAGGTGC‑ttttt > 2:751977/1‑87 (MQ=255) ccGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACt < 1:795320/150‑1 (MQ=255) agGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCATTCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTg < 1:246329/150‑1 (MQ=255) gTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGcc > 1:790415/1‑150 (MQ=255) gTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCa > 2:27914/1‑150 (MQ=255) tACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCaa > 1:117508/1‑150 (MQ=255) ggCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCAGCGAATGGTAGTACATGCTTTCTTTTAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGAt < 1:96440/150‑1 (MQ=255) cGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGc < 2:552085/150‑1 (MQ=255) gCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGcc > 1:730792/1‑150 (MQ=255) accaccAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGt < 2:428882/150‑1 (MQ=255) ccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAg < 1:758395/150‑1 (MQ=255) ccaGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAg < 1:758329/150‑1 (MQ=255) ggCGCAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGGGGaa > 1:428788/1‑150 (MQ=255) acaAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTc > 1:306461/1‑150 (MQ=255) caaaaaGCACCTCTTGAGGTGCTTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCaa < 1:166806/123‑1 (MQ=39) caaaaaGCACCTCTTGAGGTGCTTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCaa > 2:166806/2‑124 (MQ=39) aaaaaaGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcag < 1:399148/87‑1 (MQ=255) aaaaaaGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGcag > 2:399148/1‑87 (MQ=255) aaGCACCTCTTGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGaa < 2:503041/99‑1 (MQ=255) aaGCACCTCTTGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGaa > 1:503041/1‑99 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCt < 2:711992/89‑1 (MQ=255) cTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCt > 1:711992/1‑89 (MQ=255) | GGGTCAGTGATTTGCGGTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGATCCTACAGGGGCAATGCGATCCATGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGC‑TTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGCCTGCAACGATGTGGCCTTTGTCGAGGAAGTC > NC_002947/975145‑975424 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |