| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,011,483 | T→A | 14.3% | intergenic (‑418/‑109) | PP_0871 ← / → prfC | glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,011,483 | 0 | T | A | 14.3% | 64.5 / 5.1 | 28 | intergenic (‑418/‑109) | PP_0871/prfC | glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3 |
| Reads supporting (aligned to +/- strand): ref base T (14/10); new base A (2/2); total (16/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.58e-01 | |||||||||||
CTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGCGCC > NC_002947/1011344‑1011625 | cTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAACCTGACTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGCACCTGTAGGCGCGGGTTTACCCGCGAAg > 1:138283/1‑150 (MQ=255) tagTGATAAAGAGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGccc > 2:692387/3‑149 (MQ=255) cGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCa < 2:240859/150‑1 (MQ=255) cTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTg < 2:275422/150‑1 (MQ=255) gTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGt < 2:138283/150‑1 (MQ=255) gtttgtttTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGAtttt < 2:95415/142‑1 (MQ=255) gtttgtttTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGAtttt > 1:95415/1‑142 (MQ=255) gtttgtttTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAgg > 1:22345/1‑150 (MQ=255) ttttgtttGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGCACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGCCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCaa > 2:549960/1‑150 (MQ=255) ttttgtttGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCaa > 1:580241/1‑150 (MQ=255) ttttgtttGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTAAACCcgcgc < 1:369843/100‑2 (MQ=255) ttttgtttGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTAAACCcgcgc > 2:369843/1‑99 (MQ=255) ttgtGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAg < 2:580241/150‑1 (MQ=255) ctctTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTAccc > 1:449065/1‑80 (MQ=255) ctctTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTAccc < 2:449065/80‑1 (MQ=255) ctctTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACt > 1:327709/1‑150 (MQ=255) tctTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTg > 2:253396/1‑150 (MQ=255) cTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCa < 2:22345/150‑1 (MQ=255) gAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGc > 1:157183/1‑150 (MQ=255) aCCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCa < 1:688681/138‑1 (MQ=255) aCCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCa > 2:688681/1‑138 (MQ=255) gTACCTGTAGGGGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAg > 2:125871/1‑150 (MQ=255) gTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATa < 2:391729/92‑1 (MQ=255) gTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATa > 1:391729/1‑92 (MQ=255) cTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAGGTcgc < 1:253396/150‑1 (MQ=255) cttcgcgGGTAAACCCGCGAAGGGGCCGGCCCAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAg > 1:421183/4‑150 (MQ=255) gcgGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGcgcc > 1:395247/1‑150 (MQ=255) gcgGGTAAACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGcgcc < 2:421183/150‑1 (MQ=255) | CTGCGTTTTGGTTATTTGTCGTGATAAAGCGATTGCCTGTTGGGTTTGTTTTGTTTGTGCCGGCCTCTTCGCGGGTAAACTCGCTCCTACGAAGACTGCACCGCATCCGAACCCTGTGTCGTACCTGTAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCGCCATTCATTCGGCAGATTTTGGTCCAGGCCCAACTTCAGGTATGATACTGCCCCTTTCAAATCCCCCAGTCAGGCGATTTCCCATGACCAACCAGGCCGCCGAAGTCGCGAAGCGCC > NC_002947/1011344‑1011625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |