| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 128,091 | T→C | 10.5% | V190A (GTG→GCG) ‡ | polA → | DNA polymerase I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 128,091 | 0 | T | C | 10.5% | 101.1 / 3.5 | 38 | V190A (GTG→GCG) ‡ | polA | DNA polymerase I |
| Reads supporting (aligned to +/- strand): ref base T (19/15); new base C (2/2); total (21/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 | |||||||||||
CGGGCACATTACCTTGGTCAACACCATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGCCGGCCAAGCTGGAGGAGCAC > NC_002947/127951‑128233 | cGGGCACATTACCTTGGTCAACACCATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGt < 2:696462/150‑1 (MQ=255) gCACATTACCTTGGTCAACACCATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTggg > 2:180767/1‑150 (MQ=255) cacCATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTggg < 1:180767/150‑1 (MQ=255) cacCATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTggg < 1:700851/150‑1 (MQ=255) ccATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGc < 1:741759/150‑1 (MQ=255) tGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCACGCCggggat < 1:225167/124‑4 (MQ=255) tGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCACGCCggggat > 2:225167/1‑121 (MQ=255) gTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATc > 1:617132/1‑150 (MQ=255) acggcaCGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATcgg > 2:513583/6‑150 (MQ=255) tGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATcggcg > 2:243934/1‑150 (MQ=255) gTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATcggcggcg < 1:408714/139‑1 (MQ=255) gTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATcggcggcg > 2:408714/1‑139 (MQ=255) gTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGAc < 2:23706/150‑1 (MQ=255) aCGAGAAATTCGGCGTCGGCCCGGAACACATTGTCGACTTCCTTGCCCTTATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCttt > 2:551363/1‑150 (MQ=255) ttCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAAc < 2:617132/150‑1 (MQ=255) ggCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTg < 1:243934/150‑1 (MQ=255) cccGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCACGCCggggat > 1:299376/1‑69 (MQ=255) cccGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCACGCCggggat < 2:299376/72‑4 (MQ=255) cgtaaCACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGc < 1:513583/147‑1 (MQ=255) aaCGCATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAg > 2:511548/1‑150 (MQ=255) aTTATCGACTTCCTGGCCCTGATGGGTCTCAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTg > 1:223256/1‑150 (MQ=255) aTCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATGCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGAGCGGCATCGGAGGCGGTCTCAGCGACCTTTACGCAAACCTGGACAAAATGCCAGCGCTGGcc > 2:397583/1‑150 (MQ=255) aCTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTc < 2:612599/150‑1 (MQ=255) aCTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTc > 1:612599/1‑150 (MQ=255) ccTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGc > 1:732359/1‑103 (MQ=255) ccTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGc < 2:732359/103‑1 (MQ=255) cTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCgcggc < 1:438316/150‑1 (MQ=255) cccTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGACGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCa > 1:185246/1‑150 (MQ=255) ccTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGGGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCAATTGGCGGCGCCaa > 2:201926/1‑150 (MQ=255) gTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGc > 1:607938/1‑150 (MQ=255) gTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGc > 2:633721/1‑150 (MQ=255) aCAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCaa > 1:562190/1‑139 (MQ=255) aCAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCaa < 2:562190/139‑1 (MQ=255) aaGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGCCGGcc > 1:648192/1‑150 (MQ=255) gTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGCCGGCCAAg > 1:152738/1‑150 (MQ=255) cccGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGc < 1:561817/69‑1 (MQ=255) cccGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGc > 2:561817/1‑69 (MQ=255) cccGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGCCGGCCAAGCTGGAGGAGCAc < 2:446113/150‑1 (MQ=255) | CGGGCACATTACCTTGGTCAACACCATGACCGGAAGCGTGCTGGACGTGGCTGGCGTGCACGAGAAATTCGGCGTCGGCCCGGAACACATTATCGACTTCCTGGCCCTGATGGGTGACAAGGTCGACAACATCCCCGGCGTGCCGGGCGTGGGCGAAAAAACGGCGGTGGGGCTGTTGACCGGCATCGGCGGCGGTCTCAGCGACCTTTACGCCAACCTGGACAAAGTGCCAGCGCTGGCCATTCGCGGCGCCAAGACCTTGCCGGCCAAGCTGGAGGAGCAC > NC_002947/127951‑128233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |