| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,241,537 | C→T | 32.2% | intergenic (+23/‑69) | PP_1080 → / → grxD | molybdopterin‑binding oxidoreductase/monothiol glutaredoxin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,241,537 | 0 | C | T | 32.2% | 31.9 / 21.9 | 31 | intergenic (+23/‑69) | PP_1080/grxD | molybdopterin‑binding oxidoreductase/monothiol glutaredoxin |
| Reads supporting (aligned to +/- strand): ref base C (8/13); new base T (5/5); total (13/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGC > NC_002947/1241390‑1241675 | aCCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTTCCGGTCGAAGCCGCTTGAGGAACGGCAAGGCCGAGCAAGgcgc > 2:5638/1‑150 (MQ=255)aCCTGCAGATCGCCCTGGCGCAACCAGGAGTCACTGGTTATGACCTGACTGATTATCGCGTTCGGGACGTGGTTTACACGCACGCCGAAGACGAGGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAGGGCCTGTCACGgcgc > 1:578316/1‑150 (MQ=255) cTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATa > 2:482562/1‑150 (MQ=255) gcAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATg > 2:709729/1‑150 (MQ=255) aCCCGGCGTAAGGGGCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGa < 2:335652/150‑1 (MQ=255) tgacctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCGCCGTGCTCGGccttgc < 2:3832/120‑6 (MQ=255) tgacctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCGCCGTGCTCGGccttgc > 1:3832/1‑115 (MQ=255) tgacctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACtgt < 1:279579/150‑1 (MQ=255) cctgaccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTc < 1:482562/150‑1 (MQ=255) ccGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGAGTACCCGTGCAGGCTGAGTGCTCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATa < 1:412817/150‑1 (MQ=255) aGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAg < 1:784401/150‑1 (MQ=255) tttCGGGACCAGGTTTCCGGAAACGCTGCGGTGAATGGGGTACCCGTGCAGGTCGAGGCGTCTGGACGTGGGTCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAg < 1:412979/150‑1 (MQ=255) ttCGGGACCAGGTTTCCGGAAACGCTGCGGTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAgg < 1:400039/150‑1 (MQ=255) tGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGc > 1:2630/1‑120 (MQ=255) tGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGc < 2:2630/120‑1 (MQ=255) tCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCaaa < 2:578316/150‑1 (MQ=255) gTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGGGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCcaa < 1:5638/150‑1 (MQ=255) gTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat < 1:289888/112‑1 (MQ=255) gTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat > 2:289888/1‑112 (MQ=255) cacggtgtcgcattgtatcggaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCa < 1:286677‑M1/126‑1 (MQ=255) gCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATCCAATGTGATACCAGACCAACAACCTGGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCt < 1:412936/150‑1 (MQ=255) gCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGAATGTGTCGGATAGTTCAGACGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGACAACAAAACAATTATgat > 2:289353/1‑148 (MQ=255) aGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACa > 2:85433/1‑150 (MQ=255) tcggaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACAt < 2:294921‑M1/82‑1 (MQ=255) tcggaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACAt > 1:294921‑M1/8‑89 (MQ=255) gaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGc > 1:603961‑M1/5‑119 (MQ=255) gaaaGCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGc < 2:603961‑M1/115‑1 (MQ=255) gaaaGCCGAGCGCCGTGCTCGGCCTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat < 2:395045‑M1/86‑1 (MQ=255) gaaaGCCGAGCGCCGTGCTCGGCCTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGat > 1:395045‑M1/5‑90 (MQ=255) aaGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCt > 1:747864/1‑150 (MQ=255) GCCGAGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGc > 2:286677‑M1/1‑150 (MQ=255) GCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGa > 2:177783‑M1/1‑60 (MQ=255) GCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGa < 1:177783‑M1/60‑1 (MQ=255) | ACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGC > NC_002947/1241390‑1241675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |