| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,528,344 | A→G | 23.7% | T215A (ACC→GCC) | ftsA → | cell division protein FtsA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,528,344 | 0 | A | G | 23.7% | 19.9 / 4.8 | 17 | T215A (ACC→GCC) | ftsA | cell division protein FtsA |
| Reads supporting (aligned to +/- strand): ref base A (6/7); new base G (2/2); total (8/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.60e-01 | |||||||||||
GCCGCCCAGAACATCGAGAAGTGTGTGCGCCGCTGCGGCCTGGAAATCGACGACATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGACCCAGTACGCCGAAGAAATCAAGATC > NC_002947/1528200‑1528478 | gccgccCAGAACATCGAGAAGTGTGTGCGCCGCTGCGGCCTGGAAATCGACGACATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCaccacc > 1:790142/1‑150 (MQ=255) cgccCAGAACATCGAGAAGTGTGTGCGCCGCTGCGGCCTGGAAATCGACGACATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGa < 1:567039/150‑1 (MQ=255) ggccAGAACATCGAGAAGTGTGTGCGCCGCTGCGGCCTGGAAATCGACGACATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGTGCCGCCACCGat < 2:219664/148‑2 (MQ=255) cAGAACATCGAGAAGTGTGTGCGCCGCTGCGGCCTGGAAATCGACGACATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATc > 2:621596/1‑150 (MQ=255) gatgacATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATc < 2:759481/147‑1 (MQ=255) atcatcCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACACCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGAtt < 2:790142/150‑1 (MQ=255) cGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGa < 1:46095/150‑1 (MQ=255) ttCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCaa > 1:368765/1‑150 (MQ=255) ggCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGTGCCGCCACCGat < 1:632295/76‑2 (MQ=255) ggCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGTGCCGCCACCGat > 2:632295/1‑75 (MQ=255) aaaaaGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCACGGAAATTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGa > 1:250726/1‑150 (MQ=255) aaaaaGAGCTGGGCGTGTGCCTGGTGGACATCCGTAGCCGGCA‑GTTCGAGCTGACCGGCTTCACCGAGGGGTGCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTTACGCACCACCTCGCCATGGCCCTGCGTACCCCGa > 1:337503/1‑150 (MQ=255) aaaaGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCTACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGAATGCAACGACATCGCCATGGCCCTGCGTACCCCGAc < 1:585651/150‑1 (MQ=255) aaaGAGCTGGGCGTTTGCCTGTTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGAcc < 2:337503/150‑1 (MQ=255) cTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGACCCAGTAc > 1:730802/1‑150 (MQ=255) tGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGACCCAGTACg > 1:272352/1‑150 (MQ=255) gCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGACCCAGTACGCCGAAGaaa < 2:730802/150‑1 (MQ=255) gatgtCGGT‑GGTGCCGCCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGACCCAGTACGCCGAAGAAATCAAGATc > 1:298754/5‑150 (MQ=255) | GCCGCCCAGAACATCGAGAAGTGTGTGCGCCGCTGCGGCCTGGAAATCGACGACATCATCCTCGAGCAGCTGGCTTCGGCCTACTCGGTACTGACCGATGATGAAAAAGAGCTGGGCGTGTGCCTGGTGGACATCGGT‑GGCGGCACCACCGACATCGCCATCTTCACCGAGGGTGCCATCCGCCACACGGCGGTCATCCCGATTGCTGGCGACCAGGTGACCAACGACATCGCCATGGCCCTGCGTACCCCGACCCAGTACGCCGAAGAAATCAAGATC > NC_002947/1528200‑1528478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |