| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,873,937 | G→C | 12.5% | G69A (GGC→GCC) | cobU → | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,873,937 | 0 | G | C | 12.5% | 92.7 / 4.7 | 32 | G69A (GGC→GCC) | cobU | nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (14/14); new base C (2/2); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCCCGTCAGCAGCAACTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATT > NC_002947/1873797‑1874079 | cgcCCGTCAGCAGCAACTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGCCGTGGTCgc < 1:71778/150‑2 (MQ=255) cccGTCAGCAGCAACTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGCCGTGGTCgccg < 2:84702/150‑4 (MQ=255) ccGTCAGCAGCAACTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAaga < 1:3674/150‑1 (MQ=255) gcagcaACTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCAt > 1:790323/1‑150 (MQ=255) aCTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGc < 1:277350/150‑1 (MQ=255) ccAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATc > 2:595071/1‑150 (MQ=255) gctcgctcGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCCATCCGCAGGCGGTaa < 1:700975/150‑1 (MQ=255) gctcgGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCgg > 1:22046/1‑150 (MQ=255) gctcgGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCgg > 1:400553/1‑150 (MQ=255) cTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTa < 1:135072/150‑1 (MQ=255) ttGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTAc < 1:529161/150‑1 (MQ=255) gcgcTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAg < 1:460590/123‑1 (MQ=255) gcgcTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAg > 2:460590/1‑123 (MQ=255) cTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTtc > 1:596586/1‑150 (MQ=255) tggcCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCgcggc > 1:71534/1‑150 (MQ=255) tggcCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCgcggc > 1:570116/1‑150 (MQ=255) ttCAGGGGCTTGAACGACCCGCGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCTGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCa < 2:238239/150‑1 (MQ=255) cAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAgt < 2:400553/150‑1 (MQ=255) cAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAgt < 2:596586/150‑1 (MQ=255) ggCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGc < 1:595071/150‑1 (MQ=255) aCGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGcgcg > 1:582174/1‑150 (MQ=255) gCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCa > 2:162035/1‑150 (MQ=255) aTCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCa > 1:483679/1‑150 (MQ=255) tCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAg < 1:659525/140‑1 (MQ=255) tCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAg > 2:659525/1‑140 (MQ=255) ccATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACg > 2:234510/1‑150 (MQ=255) aCCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTc < 2:790323/150‑1 (MQ=255) tttttGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGAcc < 2:22046/150‑1 (MQ=255) cctcttcGACCACGCCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTggg > 2:352881/7‑150 (MQ=255) ctcttcGACCACGCCGTGGTCGAAGAGGGCATCACGTCATATCTGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGc > 1:153963/6‑150 (MQ=255) ggACCACGGCGGGGTCGAAGGGGGCGGCGCGGCGTAGGCGCAGGGGGGAACCGGGCAGATGCGACGCAACGTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCAt < 2:483679/149‑1 (MQ=255) gACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCAtt > 1:676189/1‑150 (MQ=255) gCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTtcgt > 2:596628/1‑67 (MQ=255) gCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTtcgt < 1:596628/67‑1 (MQ=255) | CGCCCGTCAGCAGCAACTGACCAAACCTGCTGGCTCGCTCGGCCAACTTGAAGCGCTGGCGATTCAGCTGGCTGGCCTTCAGGGGCTTGAACGACCCACGCTCGATCAGGTCGCCATCACCATTTTTGCCGGCGACCACGGCGTGGTCGAAGAGGGCATCTCGGCCTATCCGCAGGCGGTAACCGGGCAGATGCTACGCAACTTCGTCGGCGGGGGCGCGGCGATCAGTGTGCTGGCGCGGCAGCTGCAGGCCAGCCTGGACGTGGTCGACCTGGGCACCATT > NC_002947/1873797‑1874079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |