Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,967,690 | C→G | 20.0% | G115R (GGC→CGC) ‡ | yciK ← | putative oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,967,690 | 0 | C | G | 20.0% | 62.0 / 11.0 | 30 | G115R (GGC→CGC) ‡ | yciK | putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (11/13); new base G (3/3); total (14/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 |
GCCCCAGTAAGCCCGGCCCTTGCGCCCCACGCTGCTGCTGGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGTTTCCAGGTTGAACGGGATGACCAC > NC_002947/1967541‑1967837 | gcCCCAGTAAGCCCGGCCCTTGCGCCCCACGCTGCTGCTGGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGcc > 1:555314/1‑150 (MQ=255) gTAAGCCCGGCCCTTGCGCCCCACGCTGCTGCTGGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTTCATCACGCGCATGAAGTTGTCGCCCGACaa < 1:128222/150‑1 (MQ=255) ccGGCCCTTGCGCCCCACGCTGCTGCTGGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGGGCGACAACttcat < 1:597138/150‑5 (MQ=255) tgGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCGCGACAACTGc > 2:63487/1‑122 (MQ=255) tgGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGc < 1:63487/122‑1 (MQ=255) acgaccGAAGCGTCTTCCGACAGCTACAGCAGCGGCAGCAGAGTGCTGGTGATCATGAGGGTAGCATGGACGTGGAGGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCGCCAGCGGCGTGCACGGGCCGATGATAGACGCAttg > 2:51126/4‑150 (MQ=255) accaccGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCAttg > 1:242105/1‑150 (MQ=255) caccGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCAttgtt < 2:125931/150‑1 (MQ=255) ccGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCGGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGa < 1:757974/150‑1 (MQ=255) aaGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGCCAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCa < 2:312226/150‑1 (MQ=255) ccGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTa < 2:555314/150‑1 (MQ=255) gcagcGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAggc > 2:267859/1‑141 (MQ=255) gcagcGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAggc < 1:267859/141‑1 (MQ=255) cagcGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATGACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCACTGTTGAGCAGGCCATCTAGGCGGCCGAACTg < 1:557022/150‑1 (MQ=255) agcagGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGACGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCg > 1:699109/1‑150 (MQ=255) tGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACt > 2:137562/1‑57 (MQ=255) tGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACt < 1:137562/57‑1 (MQ=255) gCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTgg > 1:745347/1‑150 (MQ=255) aTTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGa > 2:92123/1‑122 (MQ=255) aTTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGa < 1:92123/122‑1 (MQ=255) gTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCtcgt < 2:530909/134‑1 (MQ=255) gTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCtcgt > 1:530909/1‑134 (MQ=255) gagcaGTTGTCGGGCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGtt < 1:326616/134‑1 (MQ=255) gagcaGTTGTCGGGCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGtt > 2:326616/5‑138 (MQ=255) aTGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGc < 2:547211/134‑1 (MQ=255) aTGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGc > 1:547211/1‑134 (MQ=255) tGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCGTTCGAGCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGTTTCCAGGTTGAACg < 2:353199/150‑1 (MQ=255) gAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGTTTCCAGGTTGAACgg > 1:565073/1‑150 (MQ=255) gTTGTCGGGCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGc < 2:62819/124‑1 (MQ=255) gTTGTCGGGCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGc > 1:62819/1‑124 (MQ=255) gCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGTTTCCAGGTTGAACGGGATGaccac > 1:195181/1‑150 (MQ=255) ccGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGgcc < 2:196937/92‑1 (MQ=255) ccGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGgcc > 1:196937/1‑92 (MQ=255) ccGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCtc < 1:77072/100‑1 (MQ=255) ccGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCtc > 2:77072/1‑100 (MQ=255) ccGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGc > 1:479711/1‑121 (MQ=255) ccGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGc < 2:479711/121‑1 (MQ=255) | GCCCCAGTAAGCCCGGCCCTTGCGCCCCACGCTGCTGCTGGTGAACACCACCGAAGCGTCTTCCGACAGCTTCAGCAGCGGCAGCAGGGTGCTGGTGAGCATGAAGGTGGCATTGACGTTGATGTGCATCACGCGCATGAAGTTGTCGCCCGACAACTGCTCCAGCGGCGTGCGCGGGCCGATGATCGACGCATTGTTGAGCAGGCCATCTAGGCGGCCGAACTGGCCTTCGATCATGGCCGCCAGCTCGTCGTACTGGTGTGGCAGGGCGGTTTCCAGGTTGAACGGGATGACCAC > NC_002947/1967541‑1967837 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |