| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,031,417 | C→A | 16.1% | intergenic (+47/+28) | PP_1806 → / ← kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,031,417 | 0 | C | A | 16.1% | 76.0 / 5.8 | 31 | intergenic (+47/+28) | PP_1806/kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
| Reads supporting (aligned to +/- strand): ref base C (13/13); new base A (3/2); total (16/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
CTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATCAG > NC_002947/2031278‑2031566 | cTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGAAGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATGACGTAGCGCGCCAACGACGATGCTTCTCGTTGCCTGGGTGGGCAGCGGCCTCTTGGTACGAAGCGGCt < 2:428081/150‑1 (MQ=255) tGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTTTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCtt < 1:445889/150‑1 (MQ=255) ggAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCttt > 1:502400/1‑150 (MQ=255) gaACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACt > 1:577323/1‑150 (MQ=255) aaaaTCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTGTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCAcc > 2:195607/1‑150 (MQ=255) cGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTa > 2:465654/1‑150 (MQ=255) ttGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCgg < 1:465654/150‑1 (MQ=255) ggggCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAAt < 1:353721/150‑1 (MQ=255) ggtcTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATg < 1:135605/147‑1 (MQ=255) gCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGAt > 1:562637/1‑150 (MQ=255) cTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGAAATAGTCAATTGCGGGAATGAtt < 1:195607/150‑1 (MQ=255) tATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGAttt < 2:502400/150‑1 (MQ=255) tgttgGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTAc < 2:523957/150‑1 (MQ=255) ttgGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCa < 1:597824/150‑1 (MQ=255) tcgtcgAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTAAATTGCGGGAATGATTTTACCAGatcat < 2:633579/150‑1 (MQ=255) cgAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTa < 1:349283/108‑1 (MQ=255) cgAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCACAAGCGGCTTTACTCACCGTCGTAGATTa > 2:349283/1‑108 (MQ=255) aTCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCa > 1:64221/1‑150 (MQ=255) ccGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCCCGGTGGATGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCAAGTGGTTTGATTTGTGCCAgtt > 1:447051/1‑148 (MQ=255) cGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGaa < 2:562637/150‑1 (MQ=255) gTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAg > 1:431174/1‑150 (MQ=255) tATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTTCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCa < 2:64221/150‑1 (MQ=255) aTCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCATGAAGGGTTCCAGCTTGTCCAATGGCAg > 1:394035/1‑150 (MQ=255) ttGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTgcg > 2:739910/1‑150 (MQ=255) gggTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCggg < 2:431174/150‑1 (MQ=255) aaGCCGCTTCTGGACAAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATcac > 1:49819/2‑150 (MQ=255) gCCGCTTCTGGACAAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGt < 1:620763/121‑1 (MQ=255) gCCGCTTCTGGACAAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGt > 2:620763/1‑121 (MQ=255) ccGCTTCTGGACAAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCAAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACt > 1:53263/1‑150 (MQ=255) ttGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATACAGCGATATCAGATGGGAAGGGAAGGCGTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTg > 1:257963/1‑150 (MQ=255) tCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATc > 1:575934/1‑150 (MQ=255) cAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATCAg > 1:48074/1‑150 (MQ=255) | CTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATCAG > NC_002947/2031278‑2031566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |