| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,700,087 | G→A | 13.8% | T156I (ACC→ATC) | fsr‑II ← | fosmidomycin efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,700,087 | 0 | G | A | 13.8% | 64.5 / 4.4 | 29 | T156I (ACC→ATC) | fsr‑II | fosmidomycin efflux system |
| Reads supporting (aligned to +/- strand): ref base G (12/13); new base A (2/2); total (14/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.82e-01 | |||||||||||
TCACCCGCAGTAGCACCAGAACAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATAC > NC_002947/2699938‑2700222 | tCACCCGCAGTAGCACCAGAACAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCgg < 2:355854/150‑1 (MQ=255) ccGCAGTAGCACCAGAACAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGATAcc > 2:762558/1‑150 (MQ=255) ccGCAGTAGCACCAGAACAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGATAcc > 2:762661/1‑150 (MQ=255) cACGAGAACAGCCAGCGCCGCGGCTAGCATGAACCTTGCAATGGCCGGTTGGCCGTGCGGAATGAAAATAGCCGCAGTGAGCAGCGCGCCGAGGGCTGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGcgccc < 2:307565/150‑1 (MQ=255) aCCAGAACAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGcgcccg > 1:261213/1‑150 (MQ=255) aCAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGaa < 1:685070/150‑1 (MQ=255) ccagcGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCa > 1:754399/1‑150 (MQ=255) cATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGa < 1:701508/150‑1 (MQ=255) gAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGc < 1:104615/150‑1 (MQ=255) ccAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGccgc > 1:191261/1‑148 (MQ=255) ggCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTgg > 2:381355/1‑150 (MQ=255) ggCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTgg < 2:261213/150‑1 (MQ=255) cAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGATACCGAAGCGGCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGt < 1:762558/150‑1 (MQ=255) cAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGATACCGAAGCGGCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGt < 1:762661/150‑1 (MQ=255) tGGCCGGTTGGCCGAGCGGAATGATAAGTGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGaa > 2:469439/1‑150 (MQ=255) tggggcGTGGGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGACGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCAGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGc < 2:2594/145‑1 (MQ=255) gCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGa > 1:564804/1‑150 (MQ=255) aTAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGt > 1:195125/1‑124 (MQ=255) aTAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGt < 2:195125/124‑1 (MQ=255) aTGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCAcg > 1:769726/1‑150 (MQ=255) tGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCGGCCGACCTGTAAGGTGGTTTGCGCGGTACCGAAGCGCCCGAAGGCCGGGACAACAAGCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGAGCACGGCGGCAGcca > 1:779194/1‑150 (MQ=255) gcGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACcagca < 2:779194/150‑1 (MQ=255) gcGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACcagca > 1:1774/1‑150 (MQ=255) ggccgagCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATa < 2:564804/150‑1 (MQ=255) cgagCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGtt < 2:191261/150‑1 (MQ=255) gCCGGTACTGCCGCCTACTTTGCAGGTGGATTGTGCTGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGcc < 2:172102/150‑1 (MQ=255) aCCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAgg > 1:625277/1‑150 (MQ=255) ccTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAggg < 2:754399/150‑1 (MQ=255) gAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGAt < 1:381355/150‑1 (MQ=255) aGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATAc > 2:230802/1‑150 (MQ=255) ggTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACcagca > 2:54124/1‑98 (MQ=255) ggTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACcagca < 1:54124/98‑1 (MQ=255) | TCACCCGCAGTAGCACCAGAACAGCCAGCGCAGCGGCCAGCATGAACCAGGCAATGGCCGGTTGGCCGTGCGGAATGATAATGGCAGCAGTGAGCAGCGGGCCGAGGGCCGAGCCGGTATTGCCGCCGACCTGGAAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATAC > NC_002947/2699938‑2700222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |