Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,317,256 | C→G | 13.0% | P608P (CCG→CCC) | treSA ← | trehalose synthase A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,317,256 | 0 | C | G | 13.0% | 83.8 / 2.9 | 29 | P608P (CCG→CCC) | treSA | trehalose synthase A |
Reads supporting (aligned to +/- strand): ref base C (14/11); new base G (2/2); total (16/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGTCTCGTTGATCATGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGCCGTATAGCGCCCGGGCACGC > NC_002947/3317111‑3317403 | ccGTCTCGTTGATCATGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGgc < 1:101706/150‑1 (MQ=255) cGTTGATCATGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCGGGgctgctgg < 1:118384/150‑3 (MQ=255) gTTGATCATGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCAc > 2:14439/1‑150 (MQ=255) cATGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGAAAACTAACCTAGACACAACACCCTACGGGCAGTTCAAGCGCGATCACCAGCAGCCCCGGGCTGCTCACCTCAgg < 1:14439/150‑1 (MQ=255) tGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTa > 1:167820/1‑150 (MQ=255) gCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGAc < 1:520026/150‑1 (MQ=255) aCCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGa < 2:85169/150‑1 (MQ=255) tCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGcaca < 1:471935/150‑1 (MQ=255) tCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGcaca > 1:530540/1‑150 (MQ=255) aaTCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAg < 1:345111/98‑1 (MQ=255) aaTCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAg > 2:345111/1‑98 (MQ=255) tCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCcagca > 2:23496/1‑150 (MQ=255) tCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTttc < 2:615687/150‑1 (MQ=255) cTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTttctt > 1:287982/1‑150 (MQ=255) aaGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTg < 1:23496/150‑1 (MQ=255) aGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCa > 1:61716/1‑150 (MQ=255) cAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCATCACCTGACGGCt > 2:786675/1‑91 (MQ=255) cAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCt < 1:786675/91‑1 (MQ=255) aGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGa > 1:339249/1‑150 (MQ=255) aTCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCa < 2:530540/150‑1 (MQ=255) tGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCGGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCActc > 1:584105/1‑150 (MQ=255) cgcgCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCAcagcca > 2:374303/1‑108 (MQ=255) cgcgCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCAcagcca < 1:374303/108‑1 (MQ=255) cATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGCCGtataa > 2:522731/1‑149 (MQ=255) tCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGCCGTATAgcg > 1:568925/1‑150 (MQ=255) tgagcagcCCGGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGc < 1:698070/136‑1 (MQ=255) tgagcagcCCGGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGc > 2:698070/3‑138 (MQ=255) ccAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCCAACCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGCCGTATAGCGccc > 1:696834/1‑150 (MQ=255) cagcagCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGCCGTATAGCGCCCg > 1:768213/1‑150 (MQ=255) cccGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTATCGTCCAGCTGCCTGTCTAGGCTGCCGTATATGGCGCGGGCAggc > 1:311426/1‑150 (MQ=255) | CCGTCTCGTTGATCATGTCGACCACCGGCCCAGGTGTGAACCCGGTCAACAGCAGTTCCTCGGCAATCGCGTCCTGGCCGAAGTTCAGCGCAGTGATCTGGATACCGCGCCCGGCTGGCAGCTCATGCACCATCACCAGCAGCCCCGGGCTGCTCACCTCAGGTACCAGCACCTGACGGCTGGTGGCGATGCCGTAGGCCTGGCGCACAGCCAGCAGTTTCTTCACCTTGCAGGCAAATGAATCACTCTCGTCCAGCTGCCTGTCCAGGCTGCCGTATAGCGCCCGGGCACGC > NC_002947/3317111‑3317403 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |