| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 7.7% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 7.7% | 380.5 / 16.8 | 142 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (62/69); new base C (6/5); total (68/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.44e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTC > NC_002947/196940‑197238 | aCGGCCAAACCATTACCGTTGAAGCCTGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 1:263638/150‑1 (MQ=18) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 2:326018/150‑1 (MQ=34) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 1:90785/150‑1 (MQ=34) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc > 1:193495/1‑150 (MQ=33) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Acc > 2:581312/1‑150 (MQ=35) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Accc > 2:538335/1‑150 (MQ=37) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Accc > 1:549447/1‑150 (MQ=38) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Acccc < 1:770961/150‑1 (MQ=38) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Acccc > 1:321151/1‑150 (MQ=38) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGc > 1:110062/1‑150 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGa < 2:339296/150‑1 (MQ=38) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTAAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGc < 2:644890/145‑1 (MQ=255) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGAc > 2:22660/1‑150 (MQ=37) tGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCAc < 2:193495/150‑1 (MQ=38) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCACACCCCGGCGAATCACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACg < 1:792643/150‑1 (MQ=255) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGa < 2:486340/150‑1 (MQ=39) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGCGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCa > 2:225647/1‑150 (MQ=38) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCCAGCAACTAATCCCGAATCCG‑ACCCCGGCTCAGACCACGATCa > 2:662030/1‑150 (MQ=255) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAAc < 1:651824/150‑1 (MQ=38) ggCAAGACCCACGGCAGTGTCGACGTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGCCCAATCGCGTCACCATCGAGAACGCCACAGGCGGTAATNTCGNGCNACTGACCCCGAANCCG‑ACCCCGGCTCAGACCACGATCAAc < 1:647826/150‑1 (MQ=11) cAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGa < 2:362129/150‑1 (MQ=38) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACATGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCg < 1:637236/150‑1 (MQ=25) ccAGGGCAGCGTCGATTTCCAGACCCGGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGt > 1:301100/1‑150 (MQ=21) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAAc < 2:662962/142‑1 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAAc > 1:662962/1‑142 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGt > 2:574272/1‑150 (MQ=35) ccAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGt > 1:253449/1‑150 (MQ=21) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTc < 2:632611/150‑1 (MQ=35) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 1:28261/150‑1 (MQ=40) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGacaccact > 1:420816/1‑143 (MQ=14) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacc > 1:343853/1‑150 (MQ=255) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCaccacc < 1:370400/150‑1 (MQ=40) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAAAGCCACAGGCGGTAATTTCGAGCAACTGTCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGAGGCCACCACcgc < 1:128504/150‑1 (MQ=255) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc > 1:398211/1‑150 (MQ=255) cGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGCCTCGAGCGATGCCACCACCGCGACCCTGACgg > 2:101208/1‑150 (MQ=11) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGCGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGacac > 1:774245/1‑127 (MQ=18) ggCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATACGAACATCGGAAGAG‑CGTCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc > 2:619248/1‑150 (MQ=14) gCGAATGGCGACTACAACAACGGTTCCACAGACAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGGCCCCGAATCCG‑ACCCCGGCTCAGACCACGAGCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCg < 1:764726/150‑1 (MQ=11) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGcc > 2:652273/1‑150 (MQ=38) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGa < 1:596715/119‑1 (MQ=33) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGa > 2:597010/1‑119 (MQ=33) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Ac > 1:286455/1‑83 (MQ=35) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Ac < 2:286455/83‑1 (MQ=35) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCCCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 2:527643/150‑1 (MQ=38) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Ac < 1:388560/78‑1 (MQ=35) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATc < 1:628626/96‑1 (MQ=33) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATc > 2:628626/1‑96 (MQ=34) acaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 2:764924/1‑125 (MQ=255) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa > 2:239433/1‑150 (MQ=38) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTGCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 1:68533/150‑1 (MQ=38) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 2:479709/1‑150 (MQ=38) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 1:239433/150‑1 (MQ=38) ttCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 1:106161/1‑150 (MQ=255) tCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCTTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 1:662030/150‑1 (MQ=255) cGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 2:778161/150‑1 (MQ=255) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca < 1:285143/104‑1 (MQ=40) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcca > 2:285143/1‑104 (MQ=38) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 1:116513/1‑115 (MQ=40) gTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 2:570199/150‑1 (MQ=40) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCa > 1:583860/1‑150 (MQ=255) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTac > 2:128726/1‑150 (MQ=38) gTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTac > 2:308867/1‑150 (MQ=38) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑Acc > 2:265750/1‑55 (MQ=38) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 2:469969/1‑150 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGa > 2:200364/1‑150 (MQ=38) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGa < 2:400220/150‑1 (MQ=38) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAccc < 2:106161/150‑1 (MQ=255) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc > 1:377346/1‑132 (MQ=40) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 2:377346/132‑1 (MQ=38) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:225647/150‑1 (MQ=9) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:574272/150‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 1:469969/150‑1 (MQ=39) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 2:733483/129‑1 (MQ=40) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc > 1:733483/1‑129 (MQ=40) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc > 1:717435/1‑150 (MQ=39) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc > 2:696575/1‑150 (MQ=255) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 1:461310/1‑146 (MQ=38) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGAc > 1:164998/1‑48 (MQ=32) aGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGAc < 2:164998/48‑1 (MQ=32) gCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGACGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTg > 1:277811/1‑150 (MQ=21) gCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTg < 2:398211/150‑1 (MQ=35) cGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTCCTCGCTTACACCGTGACCCTGAGCAATCCTGc < 1:20397/150‑1 (MQ=255) gTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 2:500512/139‑1 (MQ=37) gTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 1:500512/1‑139 (MQ=37) cGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCCGACCACGATCAACGACTCGGTAGACGCCACCACCGCGACCCTAACGGCGAGCCCGTCGGTCACCGGAGGCGCCGTACTCAACTACACCGTGACCCTGAGCAATCCTTCGCAGACGcc > 2:312596/1‑150 (MQ=11) gAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 2:642830/130‑1 (MQ=37) gAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa > 1:642830/1‑130 (MQ=35) gAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 1:183580/150‑1 (MQ=35) aGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 2:717435/150‑1 (MQ=35) aGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 1:496523/150‑1 (MQ=25) aGCAACTGACCCCGAACCCG‑ACCCCGGCTCAGACCACGAGCAACGACTCGGTCGATGCCACGACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg > 2:706150/1‑150 (MQ=255) gCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 1:538335/150‑1 (MQ=35) aCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc < 2:375798/68‑1 (MQ=37) aCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 2:83307/1‑96 (MQ=34) aCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 1:83307/96‑1 (MQ=34) aCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc > 1:628365/1‑105 (MQ=38) aCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc > 2:747920/1‑127 (MQ=35) aCCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 1:747920/127‑1 (MQ=37) cccGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc < 2:277811/150‑1 (MQ=40) tCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTc > 1:415849/1‑150 (MQ=40) | AACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCG‑ACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTC > NC_002947/196940‑197238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |