Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,812,702 | A→G | 10.5% | D328G (GAC→GGC) | PP_3368 → | MFS transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,812,702 | 0 | A | G | 10.5% | 152.5 / 8.0 | 57 | D328G (GAC→GGC) | PP_3368 | MFS transporter |
Reads supporting (aligned to +/- strand): ref base A (26/25); new base G (4/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 |
CGCGCCGTGGGCTTGGTACTGATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGGCGCCGCGACTGC > NC_002947/3812554‑3812849 | cgcgCCGTGGGCTTGGTACTGATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGAc > 1:565689/1‑150 (MQ=255) cTTGGTACTGATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGa < 1:573861/150‑1 (MQ=255) cTTGGTACTGATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGa < 1:780605/150‑1 (MQ=255) tACTGATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGgcgc > 1:89216/1‑150 (MQ=255) gATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAg > 1:221200/1‑150 (MQ=255) ctgcaggcggtcgCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGc < 2:777088/143‑1 (MQ=255) tgGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTg < 1:364310/150‑1 (MQ=255) cGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACAGCAGCTACCCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTc > 2:20836/1‑150 (MQ=255) gctgctGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCaa > 1:649497/1‑150 (MQ=255) tgTTCTTTCCCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATg < 1:411218/150‑1 (MQ=255) cTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCGTgcggc > 1:793734/1‑150 (MQ=255) ttACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCACTGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGt > 2:461986/1‑150 (MQ=255) cTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCaa > 1:282408/1‑150 (MQ=255) ttCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAAc > 2:659289/1‑150 (MQ=255) tCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAAcc > 1:260327/1‑150 (MQ=255) ccgccCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTgg > 2:748007/1‑150 (MQ=255) cgccCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGTCGTCCAACCATGCGGCGTTCAACCTGGc < 1:20836/150‑1 (MQ=255) cAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAAt < 1:540126/150‑1 (MQ=255) gcTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCt > 2:23347/1‑150 (MQ=255) tgtgGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTgg > 2:703067/1‑150 (MQ=255) ccTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGGCAATGTCCATGa < 1:524988/84‑1 (MQ=38) ccTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGGCAATGTCCATGa > 2:524988/1‑84 (MQ=38) tgctgGTCATCGGCCTGGTGGGCACCAGGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTgg < 2:322483/150‑1 (MQ=255) tgctgGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTgg > 1:574287/1‑150 (MQ=255) cagggCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTg > 2:264820/3‑135 (MQ=255) cagggCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTg < 1:264820/133‑1 (MQ=255) gCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCa < 2:574287/150‑1 (MQ=255) gCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCa < 2:260327/150‑1 (MQ=255) aTCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATg < 1:703067/150‑1 (MQ=255) tCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGt > 2:326972/1‑108 (MQ=255) tCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGt < 1:326972/108‑1 (MQ=255) tCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTgg > 1:228892/1‑141 (MQ=255) tCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTgg < 2:228892/141‑1 (MQ=255) tCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATgg > 1:529259/1‑150 (MQ=255) tCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTCCCACCGGCGCAATGCCCTGGGGCCGTGGCTGGGAGGCATgg < 1:461986/150‑1 (MQ=255) ggCACCATGATCGCCTTGGCGGCACCGCAACAAATGGGCCGCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGcc > 1:751844/1‑150 (MQ=255) gCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCg > 1:278387/1‑150 (MQ=255) aCCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGc > 2:260029/1‑124 (MQ=255) aCCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGc < 1:260029/124‑1 (MQ=255) aCCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTAGGAGGAAGGGCGATTACTGGCgtc > 2:767787/1‑148 (MQ=255) tGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATgg < 1:741385/150‑1 (MQ=255) gATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATggg > 2:718425/1‑150 (MQ=255) aTCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCATTGCCGGCATGGGc < 2:793734/150‑1 (MQ=255) aTCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGc < 1:701712/150‑1 (MQ=255) cGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTg < 2:649497/150‑1 (MQ=255) cACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAATCATGCGGCGTTCAGCCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCg < 2:89216/150‑1 (MQ=255) ccGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGa < 1:23347/150‑1 (MQ=255) gCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATa < 1:748007/150‑1 (MQ=255) aGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCg < 2:221200/150‑1 (MQ=255) aTCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGgc < 2:282408/150‑1 (MQ=255) gCCTCATGGGCAATGTCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGc < 1:484110/103‑1 (MQ=39) gCCTCATGGGCAATGTCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGc > 2:484110/1‑103 (MQ=39) ccTCATGGGCAATGTCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGGcgccgc > 2:349814/1‑150 (MQ=255) ccTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGGcgccgc > 1:131566/1‑150 (MQ=255) aTGGGCAATGTCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCAACGGATACATCGGCGCCGCGACt > 1:411680/1‑150 (MQ=255) aTGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGTGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGGCGCCGCGACt > 1:645164/1‑150 (MQ=255) ggACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGGCGCCGCGACTgc > 2:610466/1‑150 (MQ=255) | CGCGCCGTGGGCTTGGTACTGATGTGGTCGGTCGCCGTGCTGCTGTTCTTTACCTTCGCCGCCCAGGCGCTGTGGAGCCTGCTGCTGGGCATCGGCCTGGTGGGCACCATGATCGCCTTGGCGGCACCGCTACAGATCCGCCTCATGGACATTGCCCATGAGGCGCCTAGCCTGGCAGCGGCGTCCAACCATGCGGCGTTCAACCTGGCCAATGCCCTGGGGCCGTGGCTGGGAGGCATGGCGATCACTGCCGGCATGGGCTGGACCAGCACCGGATACATCGGCGCCGCGACTGC > NC_002947/3812554‑3812849 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |