| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,090,100 | C→G | 13.5% | S36C (TCC→TGC) ‡ | gudP → | glucarate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,090,100 | 0 | C | G | 13.5% | 96.7 / 7.3 | 37 | S36C (TCC→TGC) ‡ | gudP | glucarate transporter |
| Reads supporting (aligned to +/- strand): ref base C (16/16); new base G (3/2); total (19/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
ACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCGGTTCCAAGAACGTCTACGCCT > NC_002947/4089964‑4090237 | acaAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGaaa > 2:697327/1‑150 (MQ=255) caAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAg < 1:697327/150‑1 (MQ=255) tAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTGGAGCCTGcgata > 1:255234/1‑138 (MQ=255) tAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTGGAGCCTGcgata < 2:255234/142‑5 (MQ=255) tAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTGGAGCCTGcgata < 2:735619/138‑5 (MQ=255) tAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTGGAGCCTGcgata > 1:735619/1‑134 (MQ=255) gTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTg > 1:75243/1‑150 (MQ=255) gAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCg > 2:482531/1‑140 (MQ=255) gAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCg < 1:482531/140‑1 (MQ=255) cATGCAAGCGACTAAGAAAACGCATTTTCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACCATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCgg < 2:127051/150‑1 (MQ=255) aaGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTtata > 2:710321/1‑150 (MQ=255) aaaaCGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGcc > 2:57555/1‑150 (MQ=255) tgtgCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATg < 2:747686/150‑1 (MQ=255) gATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGtggc < 2:301871/150‑1 (MQ=255) tCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCg > 1:755321/1‑90 (MQ=255) tCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCg < 2:755321/90‑1 (MQ=255) ccTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGtggctgg < 1:710321/150‑1 (MQ=255) ccTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGtggctgg < 2:75243/150‑1 (MQ=255) tGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGAtt < 1:749577/149‑1 (MQ=255) tGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGAtt > 2:749577/1‑149 (MQ=255) tGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTc > 1:271417/1‑150 (MQ=255) gCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCAt < 1:537432/84‑1 (MQ=255) gCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCAt > 2:537432/1‑84 (MQ=255) tttCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCtggt > 1:92212/1‑150 (MQ=255) gTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCACAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGtggctgg > 1:277275/1‑150 (MQ=255) aCTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGtgg < 2:97752/114‑1 (MQ=255) aCTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGtgg > 1:97752/1‑114 (MQ=255) tATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTc < 1:57555/150‑1 (MQ=255) tGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCgg > 1:623711/1‑150 (MQ=255) ccGACCGCGCGACCATTGCTATCACAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCGGtt < 2:277275/150‑1 (MQ=255) cGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCGGTTc > 2:436501/1‑150 (MQ=255) cATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCtggt < 2:255091/112‑1 (MQ=255) cATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCtggt > 1:255091/1‑112 (MQ=255) aTTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCGGTTCCAAGAACGTCTAc < 1:16847/150‑1 (MQ=255) tttctgCAGGCTGGAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCGGTTCCAAGAACGTCTACGCCt > 2:97093/6‑150 (MQ=255) tCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGtggctg < 2:540005/109‑1 (MQ=255) tCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGtggctg > 1:540005/1‑109 (MQ=255) | ACAAAAATAACTAGTGGGAGTATTGCCAGCATGCAAGCGACTAAGAAAACGCATGTGCGCTACCTGATCCTGTTCATGCTGTTTCTGGTGACCACGATCAACTATGCCGACCGCGCGACCATTGCTATCGCAGGCTCCAGCCTGCAGAAAGACCTCGGCATTGACGCCGTAACCCTCGGTTATATCTTTTCCGCCTTCGGATGGGCTTACGTGGCTGGCCAGATTCCTGGTGGCTGGCTACTCGATCGCTTCGGTTCCAAGAACGTCTACGCCT > NC_002947/4089964‑4090237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |