Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,224,539 | G→A | 14.7% | intergenic (‑607/+214) | PP_3703 ← / ← PP_3704 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,224,539 | 0 | G | A | 14.7% | 73.3 / 6.3 | 34 | intergenic (‑607/+214) | PP_3703/PP_3704 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (12/17); new base A (2/3); total (14/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.76e-01 |
GTCGCCCTATCAATCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACAGAACCTTAGGATTGTCCATGTAAACCTGGAAAAGCGCCAAGGAAGGTTCT > NC_002947/4224397‑4224680 | gtcgCCCTATCAATCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACGACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGTAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTCAGTGGC‑‑CCAGCAGTGCCCCt > 2:578264/1‑150 (MQ=255) gtcgCCCTATCAATCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCt < 2:719692/150‑1 (MQ=255) ctcccTATCAATCCAAACGTAAATGTCCCTAAGCCTGCTTGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCtgt < 1:209413/148‑1 (MQ=255) ccTATCAATCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGACAACCCAGCGCCAGAGACACCTAGGAGGC‑‑CCAGCAGTGCACCtgtgag > 2:209413/1‑148 (MQ=255) ccTATCAATCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCa < 1:110271/150‑1 (MQ=255) aaTCTAAACGTAAATTTCCTTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATATGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAATGCACAGGTGCActgctg < 1:371348/150‑1 (MQ=255) tCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTg > 1:581353/1‑145 (MQ=255) tCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTg < 2:581353/145‑1 (MQ=255) aaaCGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAATGCACAGGTGCACTGCTgg < 2:364068/146‑1 (MQ=255) aaaCGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAATGCACAGGTGCACTGATgg > 1:364068/1‑146 (MQ=255) gactaaTGGCTCTAGGCCTGACCCCGGGGAACAACCTCCGGCCTGCAACAAACAGGGCGAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCAc < 2:351301/146‑1 (MQ=255) cTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCt > 1:357274/1‑150 (MQ=255) aaGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTa < 2:301045/150‑1 (MQ=255) aGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTAt < 1:95762/150‑1 (MQ=255) gCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGCAACCAGCAATGCACAGGTGCACTGCt > 1:162537/1‑128 (MQ=38) gCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGCAACCAGCAATGCACAGGTGCACTGCt < 2:162537/128‑1 (MQ=38) ccTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGTCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGa < 1:652106/150‑1 (MQ=255) ggggAACAACCTCGCTCCCGTAACAAAGACGGCCAGATCCGTACTACCAGGAGGTATGCGGGAAAACCCCGCGAAAAAGTAACCTAGGTGGG‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGAc < 1:776391/150‑1 (MQ=255) ggggAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGAc < 1:106211/150‑1 (MQ=255) tCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTa > 1:442606/1‑150 (MQ=255) tcgcGTAACAAAGACGGCCAGATAAGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATcgc < 2:395528/147‑1 (MQ=255) cAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTg < 2:10317/78‑1 (MQ=255) cAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTg > 1:10317/1‑78 (MQ=255) gCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGTCTTTCGCGCCCTTCTGTAGCGga < 2:272283/150‑1 (MQ=255) gCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGga < 2:357274/150‑1 (MQ=255) ccAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGtt < 2:144924/88‑1 (MQ=255) ccAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGtt > 1:144924/1‑88 (MQ=255) gTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACa > 1:445950/1‑150 (MQ=255) gATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACAGa > 2:554421/1‑150 (MQ=255) aTAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACAGaa < 2:445950/150‑1 (MQ=255) cTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACAGAACCTTAGGATTGTCCATGTAAACCTGGAAAAGCGCCaagga > 2:53266/1‑150 (MQ=255) gC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACAGAACCTTAGGATTGTCCATGTAAACCTGGAAAAGCGCCAAGGAAGGTTCt > 1:183853/1‑150 (MQ=255) ccAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCt < 1:37243/52‑1 (MQ=255) ccAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCt > 2:37243/1‑52 (MQ=255) | GTCGCCCTATCAATCCAAACGTAAATGTCCCTAAGCCTGGCGGCGGGGAACAACCTCGCTCCCGTAACAAAGACGGCCAGATACGTGATAAGCGGAGCGATGCGGGAAAACCCCGCGGAAAATAAACCTAGGTGGC‑‑CCAGCAGTGCACCTGTGCATTGCTGGTTGCCACGTGTAAAGGCTTATGAGCTAAAGACAGGACTGGGTATCGCGCCCATCTGTAGCGGAGATGATACAGAACCTTAGGATTGTCCATGTAAACCTGGAAAAGCGCCAAGGAAGGTTCT > NC_002947/4224397‑4224680 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |