| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,311,358 | T→A | 11.3% | F12I (TTT→ATT) ‡ | PP_3784 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,311,358 | 0 | T | A | 11.3% | 95.0 / 2.9 | 34 | F12I (TTT→ATT) ‡ | PP_3784 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (17/13); new base A (2/2); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
GGACACAACCGCGTGCGCTCGCAAACCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATCCAGCAACGAACAGGCACCACTTGGCGTGCTGCGTCTTGTCGTGGC > NC_002947/4311209‑4311500 | ggACACAACCGCGTGCGCTCGCAAACCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCAt < 2:351787/150‑1 (MQ=255) aaCCGCGTGCGCTCGCAAACCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGt > 1:63395/1‑150 (MQ=255) cgcgTGCGCTCGCAAACCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCAAATGCGTTGc < 1:206062/150‑1 (MQ=255) aaaCCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGctc > 1:773720/1‑150 (MQ=255) aaCCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGctct > 1:688384/1‑150 (MQ=255) ggCGTTTAACCGAATTCCGAAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATtcatc > 2:32607/1‑150 (MQ=255) gCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATtcatca < 2:688384/150‑1 (MQ=255) tttAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGcc > 1:142933/1‑118 (MQ=255) tttAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGcc < 2:142933/118‑1 (MQ=255) aaCCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGTAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAAtt > 2:340360/1‑139 (MQ=255) aaCCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGTAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAAtt < 1:340360/139‑1 (MQ=255) ccGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGtcat < 1:562061/108‑1 (MQ=255) ccGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGtcat > 2:562061/1‑108 (MQ=255) cGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCa > 1:508125/1‑123 (MQ=255) cGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCa < 2:508125/123‑1 (MQ=255) aTTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCg > 1:102928/1‑76 (MQ=255) aTTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCg < 2:102928/76‑1 (MQ=255) aTTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTc > 2:23668/1‑150 (MQ=255) gcgcCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAAt < 2:76117/150‑1 (MQ=255) ccTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCAtt > 2:103385/1‑150 (MQ=255) cGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTCGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTgccgc > 2:666654/1‑150 (MQ=255) aGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATc < 1:23668/150‑1 (MQ=255) gTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGc < 2:306658/106‑1 (MQ=255) gTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGc > 1:306658/1‑106 (MQ=255) gATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATCCAGCAACGAAc < 2:773720/150‑1 (MQ=255) atcatcAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATCCAGCAACGAACa < 2:397166/150‑1 (MQ=255) gCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGaca > 2:622108/1‑91 (MQ=255) gCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGaca < 1:622108/91‑1 (MQ=255) gCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTg < 2:436286/108‑1 (MQ=255) gCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTg > 1:436286/1‑108 (MQ=255) aCAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATCCAGCAACGAACAGGCACCACTTGGCg > 1:415729/1‑150 (MQ=255) gggCAACGCAAATGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACgt < 2:522094/59‑1 (MQ=37) gggCAACGCAAATGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACgt > 1:522094/1‑59 (MQ=37) ggCAACGCAAATGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTATGCGACTGCCTGTCGCAATCATTGCCACCTTACCGCGGCGAACGGTCACGACGTGGCGTGCTGCGTCTTGTCGTg > 1:178054/1‑150 (MQ=255) cAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATCCAGCAACGAACAGGCACCACTTGGCGTGCTGCGTCTTGTCGTGGc > 1:157455/1‑150 (MQ=255) | GGACACAACCGCGTGCGCTCGCAAACCACTCGTGGCAAGGCGTTTAACCGAATTCCGTAACGCTCTGGCCCCCGAATCGATTGCGCGCCCTCCCGTCAGTGAAAGGAAGATCATCAATGGCTAACAGCATTCCCTCCGGGGGCAACGCATTTGCGTTGCCCTTCGCCGGCTCTCGTCATCAATTCATCAGTGCCACGTGTACGCCTGACACATTCAGCGACTGCCTGTCGCAATCATTGCCGCCATCCAGCAACGAACAGGCACCACTTGGCGTGCTGCGTCTTGTCGTGGC > NC_002947/4311209‑4311500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |