| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,522,022 | A→C | 11.8% | intergenic (‑241/‑174) | icd ← / → idh | NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,522,022 | 0 | A | C | 11.8% | 72.9 / 5.7 | 34 | intergenic (‑241/‑174) | icd/idh | NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (16/14); new base C (2/2); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.23e-01 | |||||||||||
CCGCATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGA > NC_002947/4521877‑4522165 | ccgcATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATgg > 2:388699/1‑150 (MQ=255) cgcATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTCTACTCCGACGCGACCCAAGGGTCATCGGGGCAAATACCGGCAAGATGCGGTCGGTGCTAGGGCATGAATGGc < 2:607257/150‑1 (MQ=255) tgctTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATTCATGGcctagg < 1:552302/147‑5 (MQ=255) tgctTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATTCATGGcctagg > 2:552302/1‑143 (MQ=255) tgctTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATTCATGGcctagg > 2:552250/1‑143 (MQ=255) tgctTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATTCATGGcctagg < 1:552250/147‑5 (MQ=255) gctTAGTCTTTGGTCTTATAAATGGGCGGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGcc > 2:61472/1‑150 (MQ=255) cTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGgttg < 1:277440/150‑1 (MQ=255) tttGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTGCGCCGCGACCGAAGGGTCATCGGGGCGAAGCCCAGGAAAAGGCGGAACGCCATAGGCCATGAATGGCGATAAAGACTGGgttgt > 1:325246/1‑150 (MQ=255) gCCGATATCACTTGGCCTTGCTGGTAAGCGAAAATGGTTTGATATACTCCGCCGCGACAGAAGGGTCATCGGGGCAAATCCCAGGAAAATGCGGACTATCCTAGGCAATGAATGGCCATAAAGCCTGGGTTGTTACCGCTGCTCAACACt > 2:354306/1‑150 (MQ=255) aCTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCg > 1:358086/1‑150 (MQ=255) cTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATc < 2:740946/150‑1 (MQ=255) cccAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACGGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCa > 2:546084/1‑150 (MQ=255) ccAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCAc > 2:216096/1‑150 (MQ=255) tGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTc < 2:358086/150‑1 (MQ=255) ccgcGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTc < 2:31016/150‑1 (MQ=255) cgcgACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGcc < 1:44848/65‑1 (MQ=255) cgcgACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGcc > 2:44848/1‑65 (MQ=255) cGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCAt > 2:360159/1‑150 (MQ=255) cGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCAt > 2:275722/1‑150 (MQ=255) cGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGACATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCAt > 1:556675/1‑150 (MQ=255) aTCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGcc > 1:192044/1‑40 (MQ=255) aTCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGcc < 2:192044/40‑1 (MQ=255) tGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATccac < 2:22735/84‑1 (MQ=255) tGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATccac > 1:22735/1‑84 (MQ=255) cGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAgg < 2:333662/124‑1 (MQ=255) cGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAgg > 1:333662/1‑124 (MQ=255) ccTAGGCCATGAATGGACATAAAGGCTGGTTTGTTACCGCAGCTCCGCACTTGACGCTCGACTGATCGGCACACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACgaga < 1:216096/150‑1 (MQ=255) ggcATGAATAGACATACAGCCCGGGTTGTTACCGCAGCTAAGCACTTCACGTTCGACTGATGCAGCCACCATCACCGCTCGCAGCCTTTCGACTTGCCGCTCATGGCGCGGCCAGGGCTATGCGCCTAGCCTGCGCACCCCGCGACTCGa < 2:55355/148‑1 (MQ=255) gCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGa < 1:388699/150‑1 (MQ=255) ccATGAATGGCCATAACGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACga < 1:716789/142‑1 (MQ=255) ccATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACga > 2:716789/1‑142 (MQ=255) gAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATgg < 2:365930/101‑1 (MQ=255) gAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATgg > 1:365930/1‑101 (MQ=255) | CCGCATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGA > NC_002947/4521877‑4522165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |