| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,564,769 | A→G | 17.5% | intergenic (‑865/‑33) | vgrG‑III ← / → glgA | type VI secretion system protein/glycogen synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,564,769 | 0 | A | G | 17.5% | 41.5 / 4.3 | 23 | intergenic (‑865/‑33) | vgrG‑III/glgA | type VI secretion system protein/glycogen synthase |
| Reads supporting (aligned to +/- strand): ref base A (11/8); new base G (2/2); total (13/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.27e-01 | |||||||||||
CCACCAACCCAACAGCCCAATCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGATAACCGCGAGCCGCTCACCCCGGATTTCGCCACGACAGGCAAGGCACCCGGCGCCCAGCGCCAGC > NC_002947/4564630‑4564913 | ccaccaACCCAACAGCCCAATCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCTGGCACCCgtgg < 2:659717/150‑4 (MQ=255) aacAGCCCAATCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAggg > 2:540298/1‑150 (MQ=255) gCCCAATCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACACCGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACgg > 1:696774/1‑150 (MQ=255) cccAATCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGga < 1:230631/150‑1 (MQ=255) aaTCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCTGGCACCCgt > 1:698596/1‑129 (MQ=255) aaTCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCTGGCACCCgt < 2:698596/130‑2 (MQ=255) cGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAg < 2:648474/150‑1 (MQ=255) tCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGa < 1:221362/150‑1 (MQ=255) gcCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGaa < 1:159440/124‑1 (MQ=255) gcCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGaa > 2:159440/1‑124 (MQ=255) aCGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTc < 2:240332/150‑1 (MQ=255) aTGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCAc > 2:209575/1‑70 (MQ=255) aTGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCAc < 1:209575/70‑1 (MQ=255) tGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGATAACcg > 1:2110/1‑150 (MQ=255) tGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAAACGGATAACcg > 1:363628/1‑150 (MQ=255) aTTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAga < 1:626461/101‑2 (MQ=255) aTTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGc > 2:626461/1‑101 (MQ=255) aagcaGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGa < 2:599448/119‑1 (MQ=255) aagcaGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGa > 1:599448/1‑119 (MQ=255) agagagAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGATAACCGCGAGCCGCTCACCCCGGATTTCGCCACGa > 2:212492/1‑150 (MQ=255) cACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGAACAGTGCCGCTGTCGAGCGTAACGTAGACGCTTTCAAACCGGATAACCGCGAGCCGCTCACCCCGGATTTCGCCACGACAGGCAAGGCAc > 1:648098/1‑150 (MQ=255) tcGGGTGCTGGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGATAACCGCGAGCCGCTCACCCCGGATTTCGCCACGACAGGCAAGGCACCCGGCGCCCAgcgc > 1:754621/2‑150 (MQ=255) gTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGATAACCGCGAGCCGCTCACCCCGGATTTCGCCACGACAGGCAAGGCACCCGGCGCCCAGCGCCAGc > 1:3523/1‑150 (MQ=255) | CCACCAACCCAACAGCCCAATCGCTTTCGGCCGGAACGCCGATCGCGCCGTGCGTGCGCGCACGACACAGGGGCATGGAACGCACTACGCAGCATTCAGCAAGCAGAGAGAACCAGCACGAAACATCGCCACGGGTGCCAGCACCCGACCAAGCATAGGGACGGAGAGAAGTATGATCAGTGCCGCTGTCGAGCCTCACGTAGACGCTTTCAAACCGGATAACCGCGAGCCGCTCACCCCGGATTTCGCCACGACAGGCAAGGCACCCGGCGCCCAGCGCCAGC > NC_002947/4564630‑4564913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |