Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,917,405 | A→T | 9.3% | D24E (GAT→GAA) | ccmA ← | cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,917,405 | 0 | A | T | 9.3% | 127.7 / 4.8 | 43 | D24E (GAT→GAA) | ccmA | cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA |
Reads supporting (aligned to +/- strand): ref base A (17/22); new base T (2/2); total (19/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 |
GCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAA > NC_002947/4917256‑4917542 | gCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGaaa > 2:72999/1‑150 (MQ=255) tGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACATGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGATTTCGAGCTgg < 2:688955/150‑2 (MQ=255) tGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGATTTCGAGCTgg < 2:583390/150‑2 (MQ=255) ccAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAAca > 2:740434/1‑150 (MQ=255) ttGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGgcgc < 1:389467/150‑1 (MQ=255) ccACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAg > 2:575196/1‑150 (MQ=255) ccACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAg < 2:427951/150‑1 (MQ=255) aCCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc < 1:16005/150‑1 (MQ=255) aTCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAAt > 2:768513/1‑112 (MQ=255) aTCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAAt < 1:768513/112‑1 (MQ=255) gCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcaggcca < 2:517066/150‑1 (MQ=255) gCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATATGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcaggcca < 2:378338/150‑1 (MQ=255) ccGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc < 2:754184/134‑1 (MQ=255) ccGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc > 1:754184/1‑134 (MQ=255) ccGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcaggccagg > 1:541631/1‑150 (MQ=255) cGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCcgc > 1:375719/1‑150 (MQ=255) gTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCcgcg > 2:260924/1‑150 (MQ=255) aGCCCGGCCAGCAGGCGGAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc > 2:408156/1‑116 (MQ=255) aGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc < 1:408156/116‑1 (MQ=255) ccGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGATTGGAGGTGAAgg < 1:72999/150‑1 (MQ=255) agcagGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACg > 2:548056/1‑150 (MQ=255) cAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGcc < 2:541631/150‑1 (MQ=255) cTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCtt < 1:323474/150‑1 (MQ=255) cTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTa > 2:482870/1‑150 (MQ=255) tGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTg < 2:186998/150‑1 (MQ=255) gCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCaa < 2:497676/150‑1 (MQ=255) cACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAaca < 1:740434/150‑1 (MQ=255) aCTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAgg < 2:521955/103‑1 (MQ=255) aCTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAgg > 1:521955/1‑103 (MQ=255) tGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCg > 1:453237/1‑150 (MQ=255) gcagcaTGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagc < 2:109256/133‑1 (MQ=255) gcagcaTGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagc > 1:109256/1‑133 (MQ=255) gcagcaTGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAg > 2:211332/1‑150 (MQ=255) cagcaTGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGa > 1:558725/1‑150 (MQ=255) gcaTGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagcagc > 2:537483/1‑133 (MQ=255) gcaTGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagcagc < 1:537483/133‑1 (MQ=255) cGCCGGCGCCCAGCTCGAAATCGGGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTtgt < 2:435354/150‑1 (MQ=255) cGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTtgt < 1:482870/150‑1 (MQ=255) cGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTtgt < 1:260924/150‑1 (MQ=255) cGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTtgt < 1:211332/150‑1 (MQ=255) gaacAGCTCGATTTCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCaa > 2:176328/4‑150 (MQ=255) gaacAGCTCGATTTCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCaa > 2:13138/4‑150 (MQ=255) tCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCAc < 2:493168/77‑1 (MQ=255) tCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCAc > 1:493168/1‑77 (MQ=255) | GCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCCCAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAA > NC_002947/4917256‑4917542 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |