| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,141,748 | T→C | 34.1% | V12A (GTG→GCG) ‡ | PP_4526 → | MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,141,748 | 0 | T | C | 34.1% | 28.7 / 18.6 | 29 | V12A (GTG→GCG) ‡ | PP_4526 | MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (11/8); new base C (5/5); total (16/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
GGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGTGGAC > NC_002947/5141610‑5141893 | ggCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggcga < 2:326619/150‑5 (MQ=255) aaaaCAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGCCCATggc > 2:331490/1‑149 (MQ=255) aaaaCAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggc > 2:510429/1‑136 (MQ=255) aaaaCAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggc < 1:510429/138‑3 (MQ=255) aacTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGCCCATGGCCATcatcagc < 1:331490/150‑7 (MQ=255) atcatcATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggcga < 1:141664/124‑5 (MQ=255) atcatcATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggcga > 2:141664/1‑120 (MQ=255) ttttATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCccgcaactg > 1:268710/1‑150 (MQ=255) tGAAAAATAAACCCCCCTGACCTGCAATCGATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTTATCCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCccgcaactgccgcaa < 1:215794/150‑1 (MQ=255) gAAAAATAAACCGCCCTAACCTGCAATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCccgcaactgccgcaac > 1:387873/1‑150 (MQ=255) aaaCCGCCTTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGc < 2:497657/150‑1 (MQ=255) cccTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCtgatg < 2:675326/88‑1 (MQ=255) cccTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCtgatg > 1:675326/1‑88 (MQ=255) aTCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACa > 2:751994/1‑150 (MQ=255) aTCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACa < 1:751994/150‑1 (MQ=255) aGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCgctggcctgggg > 1:26319/1‑148 (MQ=255) ccTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAgg < 2:137753/112‑1 (MQ=255) ccTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAgg > 1:137753/1‑112 (MQ=255) cACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTgg > 1:193335/1‑150 (MQ=255) gCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTggg > 2:205262/1‑150 (MQ=255) tcatcAGCGCCACGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGgcg > 1:789314/5‑150 (MQ=255) tCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTgg > 1:535713/1‑135 (MQ=255) tCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTgg < 2:535713/135‑1 (MQ=255) tCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGgcg > 1:238790/1‑150 (MQ=255) tcAGCGCCACGGCGCTGATGATGGCCATGTGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTc < 1:56006/112‑1 (MQ=255) tcAGCGCCACGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTc > 2:56006/2‑113 (MQ=255) tcAGCGCCACGGCGCTGATGATGGCCATGGACATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTAt < 1:679706/136‑1 (MQ=255) tcAGCGCCACGGCGCTGATGATGGCCATGGACATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTAt > 2:679706/2‑137 (MQ=255) gcCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGTGGAc < 2:268710/150‑1 (MQ=255) | GGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGTGGAC > NC_002947/5141610‑5141893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |