Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,420,010 | G→C | 8.5% | R216R (CGG→CGC) | PP_4759 → | transcriptional regulator, GntR family |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,420,010 | 0 | G | C | 8.5% | 148.0 / 4.8 | 47 | R216R (CGG→CGC) | PP_4759 | transcriptional regulator, GntR family |
Reads supporting (aligned to +/- strand): ref base G (21/22); new base C (2/2); total (23/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
CTGCAACTGGGTAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCA > NC_002947/5419861‑5420133 | ctgcAACTGGGTAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCgcgg > 1:284745/1‑150 (MQ=255) gaCTGGGTAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCgcgggcgg > 2:547214/2‑150 (MQ=255) tGGGTAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTAACTGGTCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCCCGCGCGGCat > 1:215952/1‑149 (MQ=255) gTAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAgtgt < 2:475501/150‑1 (MQ=255) tAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCCCGCGCGGCatccgg < 2:215952/150‑6 (MQ=255) aCGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCgcgg > 1:615242/1‑137 (MQ=255) aCGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCgcgg < 2:615242/137‑1 (MQ=255) ccTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCa < 2:95224/150‑1 (MQ=255) cTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCAc > 2:638384/1‑150 (MQ=255) cTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCCCGCGCGGCatccgg > 1:44521/1‑138 (MQ=255) cTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCCCGCGCGGCatccgg < 2:44521/143‑6 (MQ=255) ccGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACATGTcc > 1:557247/1‑150 (MQ=255) aaCCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGc > 1:146478/1‑150 (MQ=255) cGCATGACCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCga > 2:282660/1‑150 (MQ=255) aTGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGAc < 1:547214/150‑1 (MQ=255) aTGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGAc < 2:146478/150‑1 (MQ=255) ccAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAgtg > 2:627429/1‑118 (MQ=255) ccAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAgtg < 1:627429/118‑1 (MQ=255) gcgGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACa < 1:28029/124‑1 (MQ=255) gcgGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACa > 2:28029/1‑124 (MQ=255) gcgGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGgactga < 1:415085/150‑1 (MQ=255) cAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAgg < 2:163788/150‑1 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTa < 1:259212/129‑1 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTa > 2:259212/1‑129 (MQ=255) aaGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGc > 1:784549/1‑150 (MQ=255) ggCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgtgt < 2:284745/150‑1 (MQ=255) ccTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTg < 1:525581/150‑1 (MQ=255) tGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGc < 1:638384/150‑1 (MQ=255) aaCCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCa < 2:784549/150‑1 (MQ=255) cTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAggg > 2:784603/1‑150 (MQ=255) ggAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTg > 1:552131/1‑150 (MQ=255) tGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGgact > 1:498460/1‑101 (MQ=255) tGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGgact < 2:498460/101‑1 (MQ=255) gATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATcc > 1:74956/1‑150 (MQ=255) gATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATcc > 2:528095/1‑150 (MQ=255) gATCCTCAATGCCATCCGCCAACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATcc < 1:150901/150‑1 (MQ=255) aTCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCa > 2:70071/1‑132 (MQ=255) aTCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCa < 1:70071/132‑1 (MQ=255) tCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgt > 2:432566/1‑104 (MQ=255) tCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgt < 1:432566/104‑1 (MQ=255) gCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACATGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTg < 2:557247/150‑1 (MQ=255) cATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgt < 2:256981/97‑1 (MQ=255) cATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAgt > 1:256981/1‑97 (MQ=255) cATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGcc > 1:567309/1‑150 (MQ=255) aTCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTg > 1:129380/1‑113 (MQ=255) aTCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTg < 2:129380/113‑1 (MQ=255) aTCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGccc > 1:667479/1‑150 (MQ=255) aTCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGccc > 2:123315/1‑150 (MQ=255) cgccgACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCa < 1:123315/150‑1 (MQ=255) gACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGcc < 1:444202/49‑1 (MQ=255) gACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGcc > 2:444202/1‑49 (MQ=255) | CTGCAACTGGGTAACGGCCTGATCCCGCGCAACCGCATGGCCCAGGCCGAGCGCGCGGGGGCCAAGCTGGCGCGGCAAGCGTACCTGGCCAACCTGGAGCATGAGGCGATCCTCAATGCCATCCGCCGACAAGACCCGGATGCCGCGCGGGCGGCAGTGTGCCTGCACCTGTCCAACAGCCGAGACCGGCTACTGCCGGACTGACTGTCAGGCAGTGTAAGACGAGTATATTGGCGTGCAGGGTGGCCGTTACATCCAGCTACCCTGCCCTCA > NC_002947/5419861‑5420133 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |