| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,455,695 | A→C | 14.5% | intergenic (‑55/+80) | PP_4792 ← / ← PP_4793 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,455,695 | 0 | A | C | 14.5% | 56.2 / 2.9 | 26 | intergenic (‑55/+80) | PP_4792/PP_4793 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (14/8); new base C (2/2); total (16/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATG > NC_002947/5455572‑5455841 | cGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGtt > 1:409515/1‑150 (MQ=255) aaGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTgaa < 2:660565/150‑1 (MQ=255) cggcggCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACATCCTTGGAGTGCGTGCAGCCTAAAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGa > 1:696098/1‑150 (MQ=255) acatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGATCGACGCCGGTCAACAAGTGCGTACCGGCGTc > 2:748121‑M1/71‑104 (MQ=255) acatcgctagccgttcaggacgccaggcgcaggctatcgcgcgccggttcttcactatcacacaactcaaGATCGACGCCGGTCAACAAGTGCGTACCGGCGTc < 1:748121‑M1/34‑1 (MQ=255) ccATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGGAGGCGTGCAGCCTCGAAGGATGTGCGCCGGTCAACACGGGCGTACCGGCGTCGAGCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCGGCGCCt > 1:578096/1‑150 (MQ=255) aTTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTgg < 1:561573/150‑1 (MQ=255) atgaAGAATCTGATCGGCATCGGCCACACCTCCTTGGCGGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCg > 2:459780/1‑120 (MQ=255) atgaAGAATCTGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCg < 1:459780/120‑1 (MQ=255) tgaAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTg > 1:628037/1‑111 (MQ=255) tgaAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTg < 2:628037/111‑1 (MQ=255) gaagaaTCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGTATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAAc > 2:298796/1‑150 (MQ=255) gcCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGt > 2:695340/1‑150 (MQ=255) tcctTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATa > 2:700162/1‑79 (MQ=255) tcctTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATa < 1:700162/79‑1 (MQ=255) ttGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCCCCCTCAACGTCTAGCGATGTGGCAGCGTCCTGGATCTCg > 2:585573/1‑150 (MQ=255) ggCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGcc < 2:778776/150‑1 (MQ=255) ttcactatcacacaactcaaGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCg < 1:196388‑M1/130‑1 (MQ=255) cacacaactcaaGATCGACGCCGGTACGCACTTGTTGACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCg > 2:196388‑M1/13‑150 (MQ=255) ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGgcgcgc < 2:64049/78‑1 (MQ=255) ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGgcgcgc > 1:64049/1‑78 (MQ=255) ccTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGc > 1:742196/1‑150 (MQ=255) cTAGAAGGATCGACGCCGGTCAACAACTGCTTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCg > 1:20805/1‑150 (MQ=255) aaGGATCGACGCCGGTCAACACGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTc < 2:409515/150‑1 (MQ=255) TCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTc > 2:742196‑M1/1‑150 (MQ=255) CGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGc > 2:377725‑M1/1‑150 (MQ=255) acaaGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAgatg > 1:305458/1‑150 (MQ=255) | CGCAAGCAGCAGCAAGAACAGCACGCCCGGCGGCATCAGCCATTGTTTGATGAAGAATCGGATCGGCATCGGCCACACCTCCTTGGCAGGCGTGCAGCCTAGAAGGATCGACGCCGGTCAACAAGTGCGTACCGGCGTCGATCTTGAGTTGTGTGATAGTGAAGAACCGGCGCGCGATAGCCTGCGCCTGGCGTCCTGAACGGCTAGCGATGTGGCAGCGTCCTGGATCTCGCCGTACTGGCGGGGCGTTTCTTGTCCTTGAGCCAGATG > NC_002947/5455572‑5455841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |