Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,539,540 | G→T | 22.3% | A498A (GCC→GCA) | PP_4872 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,539,540 | 0 | G | T | 22.3% | 48.9 / 9.7 | 27 | A498A (GCC→GCA) | PP_4872 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (9/12); new base T (2/4); total (11/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.80e-01 |
GGGCCACGCTCGGTGTGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGTTGGCAGTCGGCCCGCC > NC_002947/5539391‑5539686 | gggCCACGCTCGGTGTGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACgg < 2:129262/150‑1 (MQ=255) gCCACGCTCGGTGTGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGc < 1:679824/150‑1 (MQ=255) ccACGCTCGGTGTGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACgggtg < 1:256200/150‑3 (MQ=255) gCTCGGTGTGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGc > 2:223980/1‑150 (MQ=255) gtgtGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCCCGTGCCTTGccgggt < 1:772031/150‑6 (MQ=255) gtgtGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCCGCAAGGCCCGTGCCTTGccgggt < 1:247788/150‑6 (MQ=255) gtgtGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCCGCAAGGCCCGTGCCTTGccgggt < 1:247798/150‑6 (MQ=255) tgtgCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTaaa < 2:603112/150‑1 (MQ=255) tCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCCCGTGCCTTGccgggt < 1:709966/144‑6 (MQ=255) tCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCCCGTGCCTTGccgggt > 2:709966/1‑139 (MQ=255) tCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCg > 1:766621/1‑150 (MQ=255) aTCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGATGTTCTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCCCACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAg < 1:766798/150‑1 (MQ=255) tCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCtgt < 1:5524/150‑1 (MQ=255) gTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTc > 2:175779/1‑150 (MQ=255) cgccAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCTATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTAt < 2:64229/150‑1 (MQ=255) aaCGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAg < 1:223980/150‑1 (MQ=255) aCCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATa > 1:774306/1‑150 (MQ=255) cTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGaa < 2:790101/150‑1 (MQ=255) cTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCacga > 2:175652/1‑150 (MQ=255) cctccGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCg < 2:550582/70‑1 (MQ=255) ccACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCg > 1:550582/1‑73 (MQ=255) gcAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCgg < 1:633287/150‑1 (MQ=255) ggAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCtttt < 1:625882/150‑1 (MQ=255) gATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGATAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCg > 2:81444/1‑150 (MQ=255) cacaCCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGtt > 2:586935/1‑150 (MQ=255) cgCAAGGCCCGTGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGTTGGCAGTc > 2:411047/2‑150 (MQ=255) ggCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGTTGGCAGTCGGccc < 2:774306/150‑1 (MQ=255) ggCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATCGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGTTGGCAGTCGGccc < 2:766621/150‑1 (MQ=255) aCGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGTTGGCAGTCGGCCCGcc > 2:671909/1‑150 (MQ=255) | GGGCCACGCTCGGTGTGCTCCGGGGCAATCTTCAGGTAGCCGCCAACGTGGTGGGTGACCAGTTCCTTGACGTACTCCGGCGATTCCACCGCCAGGTCGTAGCGCAGGCCGGAAGCAATCAGGATCTTTTTCACACCCGGCAAGGCACGGGCCTTGCGGTAAAGCTCGATCAACGAGCTGTGGTCGGTATTGAGGTTTTCGCAGATACCCGGGAATACGCACGACGGCTTGCGGCAGTACTTCTCGATTTCGGGGCTTTTGCAGGCGATGCGGTACATGTTGGCAGTCGGCCCGCC > NC_002947/5539391‑5539686 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |