| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,741,559 | C→T | 11.9% | intergenic (‑174/+54) | PP_5038 ← / ← PP_5039 | lipoprotein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,741,559 | 0 | C | T | 11.9% | 98.2 / 5.9 | 42 | intergenic (‑174/+54) | PP_5038/PP_5039 | lipoprotein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (21/16); new base T (3/2); total (24/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.59e-01 | |||||||||||
GAGTGGCCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAG > NC_002947/5741416‑5741706 | gAGTGGCCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAAt < 1:659891/150‑1 (MQ=255) ggCCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGa > 1:734055/1‑150 (MQ=255) cTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCg > 1:150036/1‑150 (MQ=255) cTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCg > 1:187274/1‑150 (MQ=255) cTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAAGCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCg > 2:211737/1‑150 (MQ=255) gTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCtt < 1:211737/150‑1 (MQ=255) aCCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGTCCGCCCCCAATGGGAGCGGCCTTGCg > 2:34194/1‑150 (MQ=255) cctcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCCATGATGATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATTCCTGCAcagc > 1:647782/1‑150 (MQ=255) tcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCTCCCATTGGGGGCgg < 2:116033/123‑1 (MQ=255) tcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCTCCCATTGGGGGCgg > 1:116033/1‑123 (MQ=255) tcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCAcagcag > 2:437259/1‑150 (MQ=255) tcccAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCAcagcag > 2:680410/1‑150 (MQ=255) ttCCCTGCCCCACCCCCTATGTCCCGACACCATTGGTCGGATGGCCACTACTGTGCGAGTAATCACAAAGCATTAATCATGCGCCCAAGAAAAAAAACCGCCCCCAATGGGAGCAGCCTTTCGTCGCGATGCCTGGACAGCCGGCCCCtt > 2:141907/1‑150 (MQ=255) gCCCCACCCCCAATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCt < 2:538038/150‑1 (MQ=255) cccccTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAAc > 2:700648/1‑150 (MQ=255) cccTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCg < 1:680410/150‑1 (MQ=255) tCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATGAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg > 2:196610/1‑144 (MQ=255) tCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATGAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCgg < 1:196610/144‑1 (MQ=255) acCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGACCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCa > 1:530602/1‑150 (MQ=255) cATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGc > 2:11941/1‑150 (MQ=255) gATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTcc < 1:700648/150‑1 (MQ=255) actactGTGCGATTAATCACAAAGCATTAATCACGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCTATGGCGTCATAGCAGGCCCCTTGGCCCCCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCtt < 1:141907/150‑1 (MQ=255) tactGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCg < 2:734055/150‑1 (MQ=255) tCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCATGCTCCGGCAAAAGGTCCATCTCTTCGCTGGTGCtggagcg > 2:765128/1‑144 (MQ=255) acaAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCt > 2:794245/1‑150 (MQ=255) caAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTc < 2:187274/150‑1 (MQ=255) aaGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCa > 2:279957/1‑150 (MQ=255) aGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAg > 1:613902/1‑150 (MQ=255) aTCATGCGCCCAATACCCGCGGCAGCCACCGTTGTTAGCGGCCTTGCGTCGCGCTGCCTGCACAATTAACCGCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAgg < 1:613341/150‑1 (MQ=255) gcgcCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcg < 2:70011/150‑1 (MQ=255) gcCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggt < 1:437259/150‑1 (MQ=255) ccAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCa < 1:27103/74‑1 (MQ=255) ccAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCATct > 2:27103/1‑73 (MQ=255) aaTAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGc < 1:243128/59‑1 (MQ=255) aaTAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGc > 2:243128/1‑59 (MQ=255) gacgcaaGGCCGCTCCCATTGGGGGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcgg > 2:319604/6‑143 (MQ=255) gacgcaaGGCCGCTCCCATTGGGGGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcgg < 1:319604/138‑1 (MQ=255) aaaaaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGCCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAg > 2:451045/1‑150 (MQ=255) gcaaGCCCGCTCCCATTGGGGGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgc > 2:672422/3‑150 (MQ=255) aaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgcgc < 1:279957/150‑1 (MQ=255) aaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgcgc > 2:74855/1‑150 (MQ=255) aGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGcc < 2:613902/150‑1 (MQ=255) gccgctCCCATTGGGGGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGc < 2:426142/109‑1 (MQ=255) gccgctCCCATTGGGGGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGc > 1:426142/1‑109 (MQ=255) gccCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAg > 1:176060/1‑150 (MQ=255) | GAGTGGCCTGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAATCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGCCTGCACAGCAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAG > NC_002947/5741416‑5741706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |