| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 321,743 | G→A | 9.6% | intergenic (+28/+430) | aguA → / ← PP_0267 | agmatine deiminase/ferric siderophore receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 321,743 | 0 | G | A | 9.6% | 136.6 / 5.9 | 52 | intergenic (+28/+430) | aguA/PP_0267 | agmatine deiminase/ferric siderophore receptor |
| Reads supporting (aligned to +/- strand): ref base G (26/21); new base A (3/2); total (29/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.98e-01 | |||||||||||
TGGCAAGGATCTTCCCCGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGCCGCTCACG > NC_002947/321600‑321886 | tGGCAAGGATCTTCCCCGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACgg < 2:767046/150‑1 (MQ=255) aaGGATCTTCCCCGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCct > 1:561598/1‑150 (MQ=255) cTTCCCCGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCttttt > 2:570987/1‑150 (MQ=255) ccGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCACATGACgg > 1:129634/1‑135 (MQ=255) ccGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCACATGACgg < 2:129634/135‑1 (MQ=255) aGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTATTTTTTGCGCGGGCGACGc > 2:525872/1‑150 (MQ=255) cccGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGCGTATGTTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGc > 1:647384/1‑150 (MQ=255) cgcgAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCctc > 1:555678/1‑111 (MQ=255) cgcgAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCctc < 2:555678/111‑1 (MQ=255) gctgctCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGttt < 2:286726/150‑1 (MQ=255) gctgctCTTCGGCGGCGGCCACCTTCCCTGCCTGACCCCACACCAGCCGGCGCCGCTCAAGCGCTGAGCCCGCAATGAATGCGAGGCGCGTCATGTAACGGGCCACTTTTTTACGCGGGCGAACCCCGGAAGCCGAGCTGGCCTTCGttt > 2:244786/1‑150 (MQ=255) ctgctCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGtttt < 2:649433/150‑1 (MQ=255) ttGGGTGGCGGCAACATTCACTGCCTGACCAAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATAATAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTg < 1:450637/150‑1 (MQ=255) ttGGGTGCCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGACGTGTTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTg < 1:485068/150‑1 (MQ=255) gggTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGtt > 2:534920/1‑150 (MQ=255) tGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGttttt < 1:525872/150‑1 (MQ=255) ggcAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAg > 1:404117/1‑150 (MQ=255) ggcAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAg > 2:129177/1‑150 (MQ=255) gcAACATTCACGGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCAGCGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGc < 1:175440/150‑1 (MQ=255) aCATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGa > 2:498597/1‑150 (MQ=255) aCATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGa < 2:404117/150‑1 (MQ=255) ttCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAg < 1:534920/150‑1 (MQ=255) ccTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATg > 2:207754/1‑150 (MQ=255) cTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATgg > 2:461457/1‑150 (MQ=255) tGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGc > 2:47095/1‑150 (MQ=255) aCCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGa < 2:228361/136‑1 (MQ=255) aCCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGa > 1:228361/1‑136 (MQ=255) aaCAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGAc > 2:240271/1‑85 (MQ=255) aaCAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGAc < 1:240271/85‑1 (MQ=255) cagcagCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAg > 2:133008/1‑150 (MQ=255) ggTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGATGGCATACGTTTTGTTTTGTTTGTCAAGCAGATAAGAAGATGTCACGGTCAGCCGGCGCCTCTGAt > 2:243302/1‑150 (MQ=255) ggTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGCGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGTCGCGCCTCTGAt < 1:192909/150‑1 (MQ=255) tCAAGCGCTGGGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCt > 1:737859/1‑150 (MQ=255) cgcTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGttttt > 1:720007/1‑101 (MQ=255) cgcTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGttttt < 2:720007/101‑1 (MQ=255) cTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACaa < 1:129177/150‑1 (MQ=255) tGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAAt < 1:122939/150‑1 (MQ=255) tGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCCTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAAt > 2:214631/1‑150 (MQ=255) aGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGt > 2:206912/1‑142 (MQ=255) aGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGt < 1:206912/142‑1 (MQ=255) aGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATAc > 1:280506/1‑150 (MQ=255) tAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCgg < 1:610482/46‑1 (MQ=255) tAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCgg > 2:610482/1‑46 (MQ=255) tgaGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAg < 2:737859/150‑1 (MQ=255) gagaGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGc < 1:498597/150‑1 (MQ=255) aagagGCCCGTCACATGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAg < 2:248275/109‑1 (MQ=255) aagagGCCCGTCACATGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAg > 1:248275/2‑110 (MQ=255) ggCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGCCGCt < 1:47095/150‑1 (MQ=255) gCCCGTCACATGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGCCGCTc > 2:22273/1‑150 (MQ=255) cccGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGCCGCTCa > 2:25377/1‑150 (MQ=255) ccGTCATGTGACGGGCCTCTTTTTTGCGGGGGCGACGCCCGGAAGCCGAGCTGCCATACGTTTTGTATTGTGTTTCACGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTAATCTGCAACAATCCCTACGTAAAGTAGCCACTcgc > 1:370857/1‑148 (MQ=255) cGTCATGTGACGGGCCTCTTTTTTTCTCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGCCGCTCACg > 2:696906/1‑150 (MQ=255) tgtgACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCctct < 1:781544/108‑1 (MQ=255) tgtgACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCctct > 2:781544/1‑108 (MQ=255) | TGGCAAGGATCTTCCCCGACCATGAGGTGGTGATGATCCCGGGCCGCGAGCTGCTCTTGGGTGGCGGCAACATTCACTGCCTGACCCAACAGCAGCCGGCGCCGGTCAAGCGCTGAGCCCGTAATGAATGAGAGGCCCGTCATGTGACGGGCCTCTTTTTTGCGCGGGCGACGCCCGGAAGCCGAGCTGGCATACGTTTTGTATTGTTTTTCAAGCAGATAGCAAGATGGCACGGTCAGGCCGCGCCTCTGATCTGTAACAATACCTACGTAAATTAGCCGCTCACG > NC_002947/321600‑321886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |